Analysis of interatomic Contacts of Structural Units in PDB entry:
8TZY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8TZY entry

There are 5 chains in PDB entry 8TZY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1THR 225
B
 VAL 3CYS 214
C
 CYS 452ILE 646
D
 SER 7THR 225
E
 SER 2CYS 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8TZY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 65Right-handed 310
Helix 2
AA2
A
87 91Right-handed 310
Helix 3
AA3
B
182 187Right-handed alpha
Helix 4
AA4
C
543 547Right-handed 310
Helix 5
AA5
C
593 598Right-handed alpha
Helix 6
AA6
C
613 618Right-handed alpha
Helix 7
AA7
E
121 128Right-handed alpha
Helix 8
AA8
E
182 187Right-handed alpha
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There are 21 sheets in PDB entry 8TZY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
117 121parallel
Strand 3
A
92 94anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
46 51anti-parallel
Strand 6
A
59 60anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
117 121parallel
Strand 3
A
92 94anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
97 98anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
144 149anti-parallel
Strand 3
A
183 188anti-parallel
Strand 4
A
169 170anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
211 213anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
72 76anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 55first strand
Strand 2
B
46 50anti-parallel
Strand 3
B
35 39anti-parallel
Strand 4
B
86 91anti-parallel
Strand 5
B
97 98anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 118first strand
Strand 2
B
130 139anti-parallel
Strand 3
B
173 181anti-parallel
Strand 4
B
159 163anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 147first strand
Strand 2
B
192 198anti-parallel
Strand 3
B
206 209anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
502 503first strand
Strand 2
C
551 556anti-parallel
Strand 3
C
560 565anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
508 509first strand
Strand 2
C
513 514anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
607 609first strand
Strand 2
C
636 644anti-parallel
Strand 3
C
625 633anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 22first strand
Strand 2
D
79 83anti-parallel
Strand 3
D
68 71anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 51first strand
Strand 2
D
34 38anti-parallel
Strand 3
D
95 99anti-parallel
Strand 4
D
110 113anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
129 130first strand
Strand 2
D
143 151anti-parallel
Strand 3
D
182 189anti-parallel
Strand 4
D
169 171anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
157 160first strand
Strand 2
D
201 205anti-parallel
Strand 3
D
213 216anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
21 22first strand
Strand 2
E
73 74anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
46 50first strand
Strand 2
E
35 39anti-parallel
Strand 3
E
86 91anti-parallel
Strand 4
E
97 98anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
114 118first strand
Strand 2
E
130 139anti-parallel
Strand 3
E
173 181anti-parallel
Strand 4
E
160 163anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
144 145first strand
Strand 2
E
197 198anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
153 154first strand
Strand 2
E
148 150anti-parallel
Strand 3
E
192 194anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il