Analysis of interatomic Contacts of Structural Units in PDB entry:
8U01


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U01 entry

There is 1 chain in PDB entry 8U01 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ILE 908
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8U01. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 34Right-handed 310
Helix 2
AA2
A
52 57Right-handed alpha
Helix 3
AA3
A
58 64Right-handed 310
Helix 4
AA4
A
94 98Right-handed 310
Helix 5
AA5
A
326 340Right-handed alpha
Helix 6
AA6
A
353 364Right-handed alpha
Helix 7
AA7
A
385 403Right-handed alpha
Helix 8
AA8
A
421 437Right-handed alpha
Helix 9
AA9
A
469 472Right-handed 310
Helix 10
AB1
A
473 478Right-handed alpha
Helix 11
AB2
A
486 491Right-handed alpha
Helix 12
AB3
A
510 517Right-handed 310
Helix 13
AB4
A
523 536Right-handed alpha
Helix 14
AB5
A
538 540Right-handed 310
Helix 15
AB6
A
541 566Right-handed alpha
Helix 16
AB7
A
603 611Right-handed alpha
Helix 17
AB8
A
734 744Right-handed alpha
Helix 18
AB9
A
757 761Right-handed 310
Helix 19
AC1
A
794 798Right-handed 310
Helix 20
AC2
A
807 809Right-handed 310
Helix 21
AC3
A
810 816Right-handed alpha
Helix 22
AC4
A
823 825Right-handed 310
Helix 23
AC5
A
872 887Right-handed alpha
Helix 24
AC6
A
899 906Right-handed 310
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There are 13 sheets in PDB entry 8U01. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
177 186anti-parallel
Strand 3
A
28 29anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
177 186anti-parallel
Strand 3
A
101 110anti-parallel
Strand 4
A
132 135anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
9 14anti-parallel
Strand 3
A
84 93anti-parallel
Strand 4
A
143 152anti-parallel
Strand 5
A
112 117anti-parallel
Strand 6
A
120 125anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
521 522anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 199first strand
Strand 2
A
204 213anti-parallel
Strand 3
A
241 250anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 238first strand
Strand 2
A
219 227anti-parallel
Strand 3
A
266 274anti-parallel
Strand 4
A
280 287anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 295first strand
Strand 2
A
298 301anti-parallel
Strand 3
A
304 305anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 443first strand
Strand 2
A
408 412parallel
Strand 3
A
366 370parallel
Strand 4
A
344 347parallel
Strand 5
A
308 313parallel
Strand 6
A
572 576parallel
Strand 7
A
502 503parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 459first strand
Strand 2
A
497 499parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
614 619first strand
Strand 2
A
630 639anti-parallel
Strand 3
A
675 686anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
624 626first strand
Strand 2
A
705 714parallel
Strand 3
A
694 702anti-parallel
Strand 4
A
649 655anti-parallel
Strand 5
A
661 668anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 730first strand
Strand 2
A
746 750parallel
Strand 3
A
856 861parallel
Strand 4
A
845 853anti-parallel
Strand 5
A
833 837anti-parallel
Strand 6
A
785 790anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 730first strand
Strand 2
A
746 750parallel
Strand 3
A
856 861parallel
Strand 4
A
845 853anti-parallel
Strand 5
A
820 821anti-parallel
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