Analysis of interatomic Contacts of Structural Units in PDB entry:
8U02

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U02 entry

There are 4 chains in PDB entry 8U02 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	TYR 36	CYS 443
B	SER 6	TYR 354
A	SER 2	ASN 340
C	THR 6	GLU 63

There are 36 helices in PDB entry 8U02. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	37	40	Right-handed 310
Helix 2	AA2	R	41	61	Right-handed alpha
Helix 3	AA3	R	67	87	Right-handed alpha
Helix 4	AA4	R	87	97	Right-handed alpha
Helix 5	AA5	R	103	138	Right-handed alpha
Helix 6	AA6	R	138	143	Right-handed alpha
Helix 7	AA7	R	145	168	Right-handed alpha
Helix 8	AA8	R	169	172	Right-handed 310
Helix 9	AA9	R	186	198	Right-handed alpha
Helix 10	AB1	R	198	224	Right-handed alpha
Helix 11	AB2	R	362	399	Right-handed alpha
Helix 12	AB3	R	404	428	Right-handed alpha
Helix 13	AB4	R	430	441	Right-handed alpha
Helix 14	AB5	B	7	32	Right-handed alpha
Helix 15	AB6	B	45	54	Right-handed alpha
Helix 16	AB7	B	63	69	Right-handed alpha
Helix 17	AB8	B	69	92	Right-handed alpha
Helix 18	AB9	B	98	113	Right-handed alpha
Helix 19	AC1	B	121	133	Right-handed alpha
Helix 20	AC2	B	134	143	Right-handed alpha
Helix 21	AC3	B	150	159	Right-handed alpha
Helix 22	AC4	B	159	166	Right-handed alpha
Helix 23	AC5	B	208	214	Right-handed alpha
Helix 24	AC6	B	215	217	Right-handed 310
Helix 25	AC7	B	229	233	Right-handed 310
Helix 26	AC8	B	235	239	Right-handed 310
Helix 27	AC9	B	242	256	Right-handed alpha
Helix 28	AD1	B	271	279	Right-handed alpha
Helix 29	AD2	B	296	310	Right-handed alpha
Helix 30	AD3	B	331	352	Right-handed alpha
Helix 31	AD4	A	3	24	Right-handed alpha
Helix 32	AD5	A	29	34	Right-handed alpha
Helix 33	AD6	A	35	37	Right-handed 310
Helix 34	AD7	C	7	24	Right-handed alpha
Helix 35	AD8	C	29	44	Right-handed alpha
Helix 36	AD9	C	45	48	Right-handed 310

There are 8 sheets in PDB entry 8U02. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	192	first strand
Strand 2	B	195	201	anti-parallel
Strand 3	B	34	39	parallel
Strand 4	B	221	227	parallel
Strand 5	B	265	270	parallel
Strand 6	B	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	51	first strand
Strand 2	A	336	340	anti-parallel
Strand 3	A	327	331	anti-parallel
Strand 4	A	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	63	first strand
Strand 2	A	69	74	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	105	first strand
Strand 2	A	111	116	anti-parallel
Strand 3	A	121	125	anti-parallel
Strand 4	A	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	153	first strand
Strand 2	A	156	161	anti-parallel
Strand 3	A	165	170	anti-parallel
Strand 4	A	175	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	192	first strand
Strand 2	A	198	203	anti-parallel
Strand 3	A	208	212	anti-parallel
Strand 4	A	217	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	234	first strand
Strand 2	A	240	245	anti-parallel
Strand 3	A	250	254	anti-parallel
Strand 4	A	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	278	first strand
Strand 2	A	284	289	anti-parallel
Strand 3	A	294	298	anti-parallel
Strand 4	A	304	308	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U02

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U02