Analysis of interatomic Contacts of Structural Units in PDB entry:
8U03

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U03 entry

There are 3 chains in PDB entry 8U03 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 1	LYS 226
L	GLU 3	GLU 210
C	GLU 1	GLY 155

There are 15 helices in PDB entry 8U03. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	32	Right-handed 310
Helix 2	AA2	H	52	54	Right-handed 310
Helix 3	AA3	H	83	87	Right-handed 310
Helix 4	AA4	H	199	201	Right-handed 310
Helix 5	AA5	H	213	216	Right-handed 310
Helix 6	AA6	L	25	29	Right-handed 310
Helix 7	AA7	L	78	82	Right-handed 310
Helix 8	AA8	L	121	127	Right-handed alpha
Helix 9	AA9	L	181	186	Right-handed alpha
Helix 10	AB1	C	3	18	Right-handed alpha
Helix 11	AB2	C	24	36	Right-handed alpha
Helix 12	AB3	C	95	111	Right-handed alpha
Helix 13	AB4	C	112	120	Right-handed alpha
Helix 14	AB5	C	123	137	Right-handed alpha
Helix 15	AB6	C	147	149	Right-handed 310

There are 13 sheets in PDB entry 8U03. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	119	123	parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	119	123	parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	109	115	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	136	first strand
Strand 2	H	147	157	anti-parallel
Strand 3	H	188	197	anti-parallel
Strand 4	H	175	177	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	132	136	first strand
Strand 2	H	147	157	anti-parallel
Strand 3	H	188	197	anti-parallel
Strand 4	H	181	182	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	163	166	first strand
Strand 2	H	206	212	anti-parallel
Strand 3	H	217	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	18	23	anti-parallel
Strand 3	L	69	74	anti-parallel
Strand 4	L	61	66	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	101	105	parallel
Strand 3	L	84	89	anti-parallel
Strand 4	L	33	37	anti-parallel
Strand 5	L	44	47	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	101	105	parallel
Strand 3	L	84	89	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	130	139	anti-parallel
Strand 3	L	172	180	anti-parallel
Strand 4	L	159	161	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	114	118	first strand
Strand 2	L	130	139	anti-parallel
Strand 3	L	172	180	anti-parallel
Strand 4	L	165	166	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	153	155	first strand
Strand 2	L	145	150	anti-parallel
Strand 3	L	191	197	anti-parallel
Strand 4	L	200	206	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	42	first strand
Strand 2	C	45	48	anti-parallel
Strand 3	C	83	92	parallel
Strand 4	C	61	73	anti-parallel
Strand 5	C	151	153	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U03

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U03