Analysis of interatomic Contacts of Structural Units in PDB entry:
8U04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U04 entry

There are 7 chains in PDB entry 8U04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -1LEU 148
A
 ALA 150ARG 289
B
 SER -9LEU 148
B
 ALA 150ARG 289
C
 GLY 2LEU 148
C
 ALA 150ARG 289
D
 ALA 3LYS 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8U04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
51 57Right-handed alpha
Helix 3
AA3
A
68 77Right-handed alpha
Helix 4
AA4
A
78 80Right-handed 310
Helix 5
AA5
A
95 110Right-handed alpha
Helix 6
AA6
A
121 125Right-handed 310
Helix 7
AA7
A
137 149Right-handed alpha
Helix 8
AA8
A
162 191Right-handed alpha
Helix 9
AA9
A
199 228Right-handed alpha
Helix 10
AB1
A
236 254Right-handed alpha
Helix 11
AB2
A
259 274Right-handed alpha
Helix 12
AB3
A
280 288Right-handed 310
Helix 13
AB4
B
11 24Right-handed alpha
Helix 14
AB5
B
38 42Right-handed 310
Helix 15
AB6
B
51 59Right-handed alpha
Helix 16
AB7
B
68 77Right-handed alpha
Helix 17
AB8
B
78 80Right-handed 310
Helix 18
AB9
B
95 109Right-handed alpha
Helix 19
AC1
B
121 125Right-handed 310
Helix 20
AC2
B
137 149Right-handed alpha
Helix 21
AC3
B
162 191Right-handed alpha
Helix 22
AC4
B
199 228Right-handed alpha
Helix 23
AC5
B
236 254Right-handed alpha
Helix 24
AC6
B
259 274Right-handed alpha
Helix 25
AC7
B
280 288Right-handed 310
Helix 26
AC8
C
11 24Right-handed alpha
Helix 27
AC9
C
51 57Right-handed alpha
Helix 28
AD1
C
68 77Right-handed alpha
Helix 29
AD2
C
78 80Right-handed 310
Helix 30
AD3
C
95 109Right-handed alpha
Helix 31
AD4
C
121 125Right-handed 310
Helix 32
AD5
C
137 149Right-handed alpha
Helix 33
AD6
C
162 191Right-handed alpha
Helix 34
AD7
C
199 228Right-handed alpha
Helix 35
AD8
C
236 255Right-handed alpha
Helix 36
AD9
C
259 274Right-handed alpha
Helix 37
AE1
C
280 288Right-handed 310
Helix 38
AE2
D
11 24Right-handed alpha
Helix 39
AE3
D
51 58Right-handed alpha
Helix 40
AE4
D
68 77Right-handed alpha
Helix 41
AE5
D
78 80Right-handed 310
Helix 42
AE6
D
95 109Right-handed alpha
Helix 43
AE7
D
121 125Right-handed 310
Helix 44
AE8
D
137 149Right-handed alpha
Helix 45
AE9
D
150 152Right-handed 310
Helix 46
AF1
D
162 191Right-handed alpha
Helix 47
AF2
D
199 228Right-handed alpha
Helix 48
AF3
D
236 255Right-handed alpha
Helix 49
AF4
D
259 274Right-handed alpha
Helix 50
AF5
D
280 288Right-handed 310
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There are 4 sheets in PDB entry 8U04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
26 31parallel
Strand 3
A
2 8parallel
Strand 4
A
61 64parallel
Strand 5
A
87 90parallel
Strand 6
A
112 118parallel
Strand 7
A
131 136anti-parallel
Strand 8
A
153 158parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
28 31parallel
Strand 3
B
5 8parallel
Strand 4
B
61 64parallel
Strand 5
B
87 90parallel
Strand 6
B
112 118parallel
Strand 7
B
131 136anti-parallel
Strand 8
B
153 158parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 48first strand
Strand 2
C
27 31parallel
Strand 3
C
4 8parallel
Strand 4
C
61 64parallel
Strand 5
C
87 90parallel
Strand 6
C
112 119parallel
Strand 7
C
131 136anti-parallel
Strand 8
C
153 158parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 48first strand
Strand 2
D
27 31parallel
Strand 3
D
4 8parallel
Strand 4
D
61 64parallel
Strand 5
D
87 90parallel
Strand 6
D
112 118parallel
Strand 7
D
131 136anti-parallel
Strand 8
D
153 156parallel
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