Analysis of interatomic Contacts of Structural Units in PDB entry:
8U07


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U07 entry

There are 2 chains in PDB entry 8U07 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ARG 289
B
 GLY 2ARG 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 8U07. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
38 44Right-handed alpha
Helix 3
AA3
A
51 59Right-handed alpha
Helix 4
AA4
A
68 77Right-handed alpha
Helix 5
AA5
A
78 84Right-handed 310
Helix 6
AA6
A
95 109Right-handed alpha
Helix 7
AA7
A
121 125Right-handed 310
Helix 8
AA8
A
137 149Right-handed alpha
Helix 9
AA9
A
150 152Right-handed 310
Helix 10
AB1
A
162 191Right-handed alpha
Helix 11
AB2
A
199 228Right-handed alpha
Helix 12
AB3
A
236 254Right-handed alpha
Helix 13
AB4
A
259 274Right-handed alpha
Helix 14
AB5
A
280 288Right-handed 310
Helix 15
AB6
B
11 24Right-handed alpha
Helix 16
AB7
B
51 59Right-handed alpha
Helix 17
AB8
B
68 77Right-handed alpha
Helix 18
AB9
B
78 84Right-handed 310
Helix 19
AC1
B
95 109Right-handed alpha
Helix 20
AC2
B
121 125Right-handed 310
Helix 21
AC3
B
137 149Right-handed alpha
Helix 22
AC4
B
162 191Right-handed alpha
Helix 23
AC5
B
199 228Right-handed alpha
Helix 24
AC6
B
236 254Right-handed alpha
Helix 25
AC7
B
259 274Right-handed alpha
Helix 26
AC8
B
280 288Right-handed 310
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There are 2 sheets in PDB entry 8U07. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
27 31parallel
Strand 3
A
4 8parallel
Strand 4
A
61 64parallel
Strand 5
A
87 90parallel
Strand 6
A
112 118parallel
Strand 7
A
131 136anti-parallel
Strand 8
A
153 158parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
27 31parallel
Strand 3
B
4 8parallel
Strand 4
B
61 64parallel
Strand 5
B
87 90parallel
Strand 6
B
112 118parallel
Strand 7
B
131 136anti-parallel
Strand 8
B
153 156parallel
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