Analysis of interatomic Contacts of Structural Units in PDB entry:
8U08

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U08 entry

There are 3 chains in PDB entry 8U08 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 1	CYS 234
L	GLU 2	GLU 212
C	VAL 2	GLY 155

There are 18 helices in PDB entry 8U08. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	32	Right-handed 310
Helix 2	AA2	H	64	67	Right-handed 310
Helix 3	AA3	H	76	78	Right-handed 310
Helix 4	AA4	H	89	93	Right-handed 310
Helix 5	AA5	H	205	207	Right-handed 310
Helix 6	AA6	H	219	222	Right-handed 310
Helix 7	AA7	L	24	28	Right-handed 310
Helix 8	AA8	L	77	81	Right-handed 310
Helix 9	AA9	L	123	129	Right-handed alpha
Helix 10	AB1	L	183	190	Right-handed alpha
Helix 11	AB2	C	3	18	Right-handed alpha
Helix 12	AB3	C	24	36	Right-handed alpha
Helix 13	AB4	C	53	57	Right-handed 310
Helix 14	AB5	C	95	111	Right-handed alpha
Helix 15	AB6	C	112	122	Right-handed alpha
Helix 16	AB7	C	123	137	Right-handed alpha
Helix 17	AB8	C	138	142	Right-handed 310
Helix 18	AB9	C	147	149	Right-handed 310

There are 13 sheets in PDB entry 8U08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	80	85	anti-parallel
Strand 4	H	70	75	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	125	129	parallel
Strand 3	H	94	104	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	60	62	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	125	129	parallel
Strand 3	H	94	104	anti-parallel
Strand 4	H	115	121	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	142	first strand
Strand 2	H	153	163	anti-parallel
Strand 3	H	194	203	anti-parallel
Strand 4	H	181	183	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	138	142	first strand
Strand 2	H	153	163	anti-parallel
Strand 3	H	194	203	anti-parallel
Strand 4	H	187	188	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	172	first strand
Strand 2	H	212	218	anti-parallel
Strand 3	H	223	229	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	17	22	anti-parallel
Strand 3	L	68	73	anti-parallel
Strand 4	L	60	65	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	8	12	first strand
Strand 2	L	103	108	parallel
Strand 3	L	82	89	anti-parallel
Strand 4	L	32	36	anti-parallel
Strand 5	L	43	46	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	8	12	first strand
Strand 2	L	103	108	parallel
Strand 3	L	82	89	anti-parallel
Strand 4	L	97	99	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	132	141	anti-parallel
Strand 3	L	174	182	anti-parallel
Strand 4	L	161	163	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	120	first strand
Strand 2	L	132	141	anti-parallel
Strand 3	L	174	182	anti-parallel
Strand 4	L	167	168	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	155	156	first strand
Strand 2	L	147	152	anti-parallel
Strand 3	L	193	199	anti-parallel
Strand 4	L	202	208	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	46	48	anti-parallel
Strand 3	C	83	92	parallel
Strand 4	C	61	73	anti-parallel
Strand 5	C	151	154	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U08

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U08