Analysis of interatomic Contacts of Structural Units in PDB entry:
8U09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U09 entry

There is 1 chain in PDB entry 8U09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4ASP 410
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 8U09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 18Right-handed alpha
Helix 2
AA2
A
19 26Right-handed alpha
Helix 3
AA3
A
26 38Right-handed alpha
Helix 4
AA4
A
44 47Right-handed 310
Helix 5
AA5
A
53 63Right-handed alpha
Helix 6
AA6
A
72 80Right-handed alpha
Helix 7
AA7
A
88 100Right-handed alpha
Helix 8
AA8
A
101 103Right-handed 310
Helix 9
AA9
A
104 115Right-handed alpha
Helix 10
AB1
A
115 131Right-handed alpha
Helix 11
AB2
A
135 139Right-handed alpha
Helix 12
AB3
A
139 152Right-handed alpha
Helix 13
AB4
A
158 174Right-handed alpha
Helix 14
AB5
A
186 189Right-handed 310
Helix 15
AB6
A
190 205Right-handed alpha
Helix 16
AB7
A
220 226Right-handed alpha
Helix 17
AB8
A
235 250Right-handed alpha
Helix 18
AB9
A
252 267Right-handed alpha
Helix 19
AC1
A
268 277Right-handed alpha
Helix 20
AC2
A
278 280Right-handed 310
Helix 21
AC3
A
281 293Right-handed alpha
Helix 22
AC4
A
324 329Right-handed alpha
Helix 23
AC5
A
355 359Right-handed 310
Helix 24
AC6
A
365 381Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8U09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
48 51anti-parallel
Strand 3
A
321 323parallel
Strand 4
A
300 304anti-parallel
Strand 5
A
67 69anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 134first strand
Strand 2
A
406 408anti-parallel
Strand 3
A
385 386anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 310first strand
Strand 2
A
313 315anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 395first strand
Strand 2
A
401 402anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il