Analysis of interatomic Contacts of Structural Units in PDB entry:
8U0A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U0A entry

There is 1 chain in PDB entry 8U0A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 4ASP 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8U0A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 18Right-handed alpha
Helix 2
AA2
A
20 40Right-handed alpha
Helix 3
AA3
A
107 122Right-handed alpha
Helix 4
AA4
A
125 136Right-handed alpha
Helix 5
AA5
A
137 140Right-handed 310
Helix 6
AA6
A
163 168Right-handed 310
Helix 7
AA7
A
192 212Right-handed alpha
Helix 8
AA8
A
217 232Right-handed alpha
Helix 9
AA9
A
244 253Right-handed alpha
Helix 10
AB1
A
255 258Right-handed 310
Helix 11
AB2
A
259 276Right-handed alpha
Helix 12
AB3
A
280 282Right-handed 310
Helix 13
AB4
A
283 288Right-handed alpha
Helix 14
AB5
A
289 291Right-handed 310
Helix 15
AB6
A
295 308Right-handed alpha
Helix 16
AB7
A
311 317Right-handed alpha
Helix 17
AB8
A
323 332Right-handed alpha
Helix 18
AB9
A
343 348Right-handed 310
Helix 19
AC1
A
364 378Right-handed alpha
Helix 20
AC2
A
380 385Right-handed alpha
Helix 21
AC3
A
393 408Right-handed alpha
Helix 22
AC4
A
460 471Right-handed alpha
Helix 23
AC5
A
476 488Right-handed alpha
Helix 24
AC6
A
496 506Right-handed alpha
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There are 3 sheets in PDB entry 8U0A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 102first strand
Strand 2
A
169 172parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
161 162anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
153 156anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il