Analysis of interatomic Contacts of Structural Units in PDB entry:
8U0G


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U0G entry

There are 2 chains in PDB entry 8U0G (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4ARG 229
B
 PRO 5ARG 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8U0G. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 32Right-handed alpha
Helix 2
AA2
A
37 46Right-handed alpha
Helix 3
AA3
A
63 74Right-handed alpha
Helix 4
AA4
A
76 96Right-handed alpha
Helix 5
AA5
A
97 108Right-handed alpha
Helix 6
AA6
A
110 121Right-handed alpha
Helix 7
AA7
A
125 137Right-handed alpha
Helix 8
AA8
A
143 156Right-handed alpha
Helix 9
AA9
A
159 168Right-handed alpha
Helix 10
AB1
A
171 176Right-handed 310
Helix 11
AB2
A
177 199Right-handed alpha
Helix 12
AB3
A
202 226Right-handed alpha
Helix 13
AB4
B
25 32Right-handed alpha
Helix 14
AB5
B
37 46Right-handed alpha
Helix 15
AB6
B
64 74Right-handed alpha
Helix 16
AB7
B
76 96Right-handed alpha
Helix 17
AB8
B
97 108Right-handed alpha
Helix 18
AB9
B
110 137Right-handed alpha
Helix 19
AC1
B
142 157Right-handed alpha
Helix 20
AC2
B
159 167Right-handed alpha
Helix 21
AC3
B
171 176Right-handed 310
Helix 22
AC4
B
177 199Right-handed alpha
Helix 23
AC5
B
202 220Right-handed alpha
Helix 24
AC6
B
221 223Right-handed 310
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There are 4 sheets in PDB entry 8U0G. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 10first strand
Strand 2
A
13 16anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
58 62anti-parallel
Strand 3
A
51 53anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 10first strand
Strand 2
B
13 16anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
58 63anti-parallel
Strand 3
B
51 53anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il