Analysis of interatomic Contacts of Structural Units in PDB entry:
8U0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U0J entry

There are 4 chains in PDB entry 8U0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 11SER 687
B
 G 1 T 14
D
 A 5 T 27
F
 A 1 A 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8U0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
184 186Right-handed 310
Helix 2
AA2
A
242 247Right-handed alpha
Helix 3
AA3
A
249 266Right-handed alpha
Helix 4
AA4
A
285 301Right-handed alpha
Helix 5
AA5
A
317 328Right-handed alpha
Helix 6
AA6
A
351 355Right-handed 310
Helix 7
AA7
A
361 370Right-handed alpha
Helix 8
AA8
A
380 384Right-handed 310
Helix 9
AA9
A
391 410Right-handed alpha
Helix 10
AB1
A
436 441Right-handed alpha
Helix 11
AB2
A
462 473Right-handed alpha
Helix 12
AB3
A
474 480Right-handed 310
Helix 13
AB4
A
511 528Right-handed alpha
Helix 14
AB5
A
531 542Right-handed alpha
Helix 15
AB6
A
547 558Right-handed alpha
Helix 16
AB7
A
565 572Right-handed 310
Helix 17
AB8
A
576 589Right-handed alpha
Helix 18
AB9
A
649 657Right-handed 310
Helix 19
AC1
A
670 681Right-handed alpha
Helix 20
AC2
A
682 684Right-handed 310
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There are 6 sheets in PDB entry 8U0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
136 144first strand
Strand 2
A
152 162anti-parallel
Strand 3
A
172 177anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
220 221anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
631 632anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 336first strand
Strand 2
A
305 309parallel
Strand 3
A
344 348parallel
Strand 4
A
375 378parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 460first strand
Strand 2
A
446 452anti-parallel
Strand 3
A
425 429anti-parallel
Strand 4
A
489 491anti-parallel
Strand 5
A
498 508anti-parallel
Strand 6
A
636 642anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 613first strand
Strand 2
A
620 621anti-parallel
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