Analysis of interatomic Contacts of Structural Units in PDB entry:
8U0N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U0N entry

There are 2 chains in PDB entry 8U0N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0GLU 261
B
 HIS 0GLU 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 8U0N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 12Right-handed alpha
Helix 2
AA2
A
21 34Right-handed alpha
Helix 3
AA3
A
51 59Right-handed alpha
Helix 4
AA4
A
60 63Right-handed 310
Helix 5
AA5
A
67 96Right-handed alpha
Helix 6
AA6
A
104 108Right-handed alpha
Helix 7
AA7
A
121 130Right-handed alpha
Helix 8
AA8
A
152 165Right-handed alpha
Helix 9
AA9
A
195 204Right-handed alpha
Helix 10
AB1
A
218 228Right-handed alpha
Helix 11
AB2
A
241 249Right-handed alpha
Helix 12
AB3
B
21 33Right-handed alpha
Helix 13
AB4
B
53 59Right-handed alpha
Helix 14
AB5
B
60 63Right-handed 310
Helix 15
AB6
B
67 96Right-handed alpha
Helix 16
AB7
B
104 108Right-handed alpha
Helix 17
AB8
B
121 130Right-handed alpha
Helix 18
AB9
B
152 165Right-handed alpha
Helix 19
AC1
B
195 205Right-handed alpha
Helix 20
AC2
B
218 228Right-handed alpha
Helix 21
AC3
B
241 250Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 8U0N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 102first strand
Strand 2
A
133 137parallel
Strand 3
A
40 45parallel
Strand 4
A
1 6parallel
Strand 5
A
168 173parallel
Strand 6
A
232 237parallel
Strand 7
A
255 257anti-parallel
Strand 8
A
193 194parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
115 119anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 143first strand
Strand 2
A
147 151anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 102first strand
Strand 2
B
133 137parallel
Strand 3
B
40 45parallel
Strand 4
B
1 6parallel
Strand 5
B
168 173parallel
Strand 6
B
232 237parallel
Strand 7
B
255 257anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 112first strand
Strand 2
B
115 119anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 143first strand
Strand 2
B
147 151anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il