Analysis of interatomic Contacts of Structural Units in PDB entry:
8U0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U0T entry

There are 2 chains in PDB entry 8U0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 20SER 707
B
 CYS 326GLU 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 8U0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 53Right-handed alpha
Helix 2
AA2
A
55 80Right-handed alpha
Helix 3
AA3
A
81 83Right-handed 310
Helix 4
AA4
A
84 88Right-handed 310
Helix 5
AA5
A
90 102Right-handed alpha
Helix 6
AA6
A
109 129Right-handed alpha
Helix 7
AA7
A
148 153Right-handed alpha
Helix 8
AA8
A
157 172Right-handed alpha
Helix 9
AA9
A
172 193Right-handed alpha
Helix 10
AB1
A
198 204Right-handed alpha
Helix 11
AB2
A
205 208Right-handed 310
Helix 12
AB3
A
218 220Right-handed 310
Helix 13
AB4
A
221 249Right-handed alpha
Helix 14
AB5
A
265 267Right-handed 310
Helix 15
AB6
A
275 282Right-handed 310
Helix 16
AB7
A
293 300Right-handed alpha
Helix 17
AB8
A
303 318Right-handed alpha
Helix 18
AB9
A
324 331Right-handed alpha
Helix 19
AC1
A
366 385Right-handed alpha
Helix 20
AC2
A
389 393Right-handed 310
Helix 21
AC3
A
397 411Right-handed alpha
Helix 22
AC4
A
414 422Right-handed alpha
Helix 23
AC5
A
431 447Right-handed alpha
Helix 24
AC6
A
449 466Right-handed alpha
Helix 25
AC7
A
469 471Right-handed 310
Helix 26
AC8
A
472 485Right-handed alpha
Helix 27
AC9
A
503 508Right-handed alpha
Helix 28
AD1
A
513 533Right-handed alpha
Helix 29
AD2
A
538 542Right-handed 310
Helix 30
AD3
A
547 559Right-handed alpha
Helix 31
AD4
A
565 575Right-handed alpha
Helix 32
AD5
A
581 588Right-handed alpha
Helix 33
AD6
A
588 599Right-handed alpha
Helix 34
AD7
A
636 659Right-handed alpha
Helix 35
AD8
A
666 668Right-handed 310
Helix 36
AD9
A
696 707Right-handed alpha
Helix 37
AE1
B
327 331Right-handed 310
Helix 38
AE2
B
339 343Right-handed 310
Helix 39
AE3
B
396 401Right-handed 310
Helix 40
AE4
B
407 413Right-handed alpha
Helix 41
AE5
B
429 434Right-handed alpha
Helix 42
AE6
B
491 494Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 8U0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
137 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 352first strand
Strand 2
A
355 359anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
618 620first strand
Strand 2
A
680 685anti-parallel
Strand 3
A
670 676anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 348first strand
Strand 2
B
386 394anti-parallel
Strand 3
B
496 504anti-parallel
Strand 4
B
422 428anti-parallel
Strand 5
B
367 371anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
441 443first strand
Strand 2
B
481 483anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 463first strand
Strand 2
B
477 478anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il