Analysis of interatomic Contacts of Structural Units in PDB entry:
8U0W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U0W entry

There are 2 chains in PDB entry 8U0W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2SER 1190
C
 T 10 T 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 8U0W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 9Right-handed 310
Helix 2
AA2
A
20 38Right-handed alpha
Helix 3
AA3
A
56 78Right-handed alpha
Helix 4
AA4
A
94 112Right-handed alpha
Helix 5
AA5
A
121 131Right-handed alpha
Helix 6
AA6
A
137 144Right-handed alpha
Helix 7
AA7
A
146 157Right-handed alpha
Helix 8
AA8
A
158 161Right-handed 310
Helix 9
AA9
A
162 179Right-handed alpha
Helix 10
AB1
A
181 209Right-handed alpha
Helix 11
AB2
A
217 227Right-handed alpha
Helix 12
AB3
A
227 235Right-handed alpha
Helix 13
AB4
A
243 250Right-handed alpha
Helix 14
AB5
A
259 263Right-handed 310
Helix 15
AB6
A
276 286Right-handed alpha
Helix 16
AB7
A
295 299Right-handed 310
Helix 17
AB8
A
324 336Right-handed alpha
Helix 18
AB9
A
402 428Right-handed alpha
Helix 19
AC1
A
445 457Right-handed alpha
Helix 20
AC2
A
458 462Right-handed 310
Helix 21
AC3
A
467 474Right-handed alpha
Helix 22
AC4
A
493 497Right-handed 310
Helix 23
AC5
A
524 535Right-handed alpha
Helix 24
AC6
A
558 565Right-handed alpha
Helix 25
AC7
A
566 568Right-handed 310
Helix 26
AC8
A
572 587Right-handed alpha
Helix 27
AC9
A
588 593Right-handed alpha
Helix 28
AD1
A
604 616Right-handed alpha
Helix 29
AD2
A
621 629Right-handed alpha
Helix 30
AD3
A
633 656Right-handed alpha
Helix 31
AD4
A
672 674Right-handed 310
Helix 32
AD5
A
675 694Right-handed alpha
Helix 33
AD6
A
704 711Right-handed alpha
Helix 34
AD7
A
713 723Right-handed alpha
Helix 35
AD8
A
747 752Right-handed alpha
Helix 36
AD9
A
789 807Right-handed alpha
Helix 37
AE1
A
811 824Right-handed alpha
Helix 38
AE2
A
828 836Right-handed alpha
Helix 39
AE3
A
839 853Right-handed alpha
Helix 40
AE4
A
874 879Right-handed alpha
Helix 41
AE5
A
889 902Right-handed alpha
Helix 42
AE6
A
909 939Right-handed alpha
Helix 43
AE7
A
943 960Right-handed alpha
Helix 44
AE8
A
970 972Right-handed 310
Helix 45
AE9
A
992 996Right-handed 310
Helix 46
AF1
A
1009 1013Right-handed 310
Helix 47
AF2
A
1014 1019Right-handed alpha
Helix 48
AF3
A
1023 1032Right-handed alpha
Helix 49
AF4
A
1045 1052Right-handed alpha
Helix 50
AF5
A
1052 1068Right-handed alpha
Helix 51
AF6
A
1077 1081Right-handed 310
Helix 52
AF7
A
1117 1127Right-handed alpha
Helix 53
AF8
A
1155 1159Right-handed 310
Helix 54
AF9
A
1176 1189Right-handed alpha
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There are 10 sheets in PDB entry 8U0W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
538 542parallel
Strand 3
A
268 272parallel
Strand 4
A
88 91parallel
Strand 5
A
239 241parallel
Strand 6
A
132 134parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
117 118anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 252first strand
Strand 2
A
257 258anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
514 521anti-parallel
Strand 3
A
499 506anti-parallel
Strand 4
A
354 359anti-parallel
Strand 5
A
364 366anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 601first strand
Strand 2
A
865 871parallel
Strand 3
A
773 776parallel
Strand 4
A
662 667parallel
Strand 5
A
726 732parallel
Strand 6
A
697 700parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
744 745first strand
Strand 2
A
768 769anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
755 757first strand
Strand 2
A
861 863anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
962 963first strand
Strand 2
A
1042 1044anti-parallel
Strand 3
A
974 976anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
983 985first strand
Strand 2
A
1006 1008anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1071 1074first strand
Strand 2
A
1086 1090anti-parallel
Strand 3
A
1097 1102anti-parallel
Strand 4
A
1130 1135parallel
Strand 5
A
1161 1164parallel
Strand 6
A
1145 1147anti-parallel
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