Analysis of interatomic Contacts of Structural Units in PDB entry:
8U0Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U0Y entry

There are 4 chains in PDB entry 8U0Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	CYS 164
B	MET 1	ILE 176
C	GLN 3	PRO 198
D	THR 3	TRP 239

There are 25 helices in PDB entry 8U0Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	15	Right-handed alpha
Helix 2	AA2	A	20	47	Right-handed alpha
Helix 3	AA3	A	47	63	Right-handed alpha
Helix 4	AA4	A	64	68	Right-handed 310
Helix 5	AA5	A	75	100	Right-handed alpha
Helix 6	AA6	A	102	109	Right-handed alpha
Helix 7	AA7	A	112	121	Right-handed alpha
Helix 8	AA8	A	123	138	Right-handed alpha
Helix 9	AA9	A	145	162	Right-handed alpha
Helix 10	AB1	B	3	15	Right-handed alpha
Helix 11	AB2	B	20	33	Right-handed alpha
Helix 12	AB3	B	33	46	Right-handed alpha
Helix 13	AB4	B	47	63	Right-handed alpha
Helix 14	AB5	B	64	68	Right-handed 310
Helix 15	AB6	B	75	100	Right-handed alpha
Helix 16	AB7	B	102	109	Right-handed alpha
Helix 17	AB8	B	112	121	Right-handed alpha
Helix 18	AB9	B	123	144	Right-handed alpha
Helix 19	AC1	B	158	176	Right-handed alpha
Helix 20	AC2	C	78	82	Right-handed 310
Helix 21	AC3	C	181	185	Right-handed 310
Helix 22	AC4	D	83	87	Right-handed 310
Helix 23	AC5	D	115	119	Right-handed 310
Helix 24	AC6	D	130	138	Right-handed alpha
Helix 25	AC7	D	197	202	Right-handed alpha

There are 11 sheets in PDB entry 8U0Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	69	74	anti-parallel
Strand 4	C	59	64	anti-parallel
Strand 5	C	53	56	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	103	108	parallel
Strand 3	C	83	89	anti-parallel
Strand 4	C	32	37	anti-parallel
Strand 5	C	43	49	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	14	first strand
Strand 2	C	103	108	parallel
Strand 3	C	83	89	anti-parallel
Strand 4	C	98	99	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	123	first strand
Strand 2	D	123	128	anti-parallel
Strand 3	D	139	149	anti-parallel
Strand 4	D	187	196	anti-parallel
Strand 5	D	169	171	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	123	first strand
Strand 2	D	123	128	anti-parallel
Strand 3	D	139	149	anti-parallel
Strand 4	D	187	196	anti-parallel
Strand 5	D	176	177	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	137	first strand
Strand 2	C	166	174	anti-parallel
Strand 3	C	152	153	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	137	first strand
Strand 2	C	166	174	anti-parallel
Strand 3	C	157	161	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	8	first strand
Strand 2	D	20	26	anti-parallel
Strand 3	D	74	79	anti-parallel
Strand 4	D	65	68	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	15	first strand
Strand 2	D	108	113	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	32	38	anti-parallel
Strand 5	D	44	51	anti-parallel
Strand 6	D	54	58	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	15	first strand
Strand 2	D	108	113	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	103	104	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	164	first strand
Strand 2	D	154	160	anti-parallel
Strand 3	D	208	213	anti-parallel
Strand 4	D	232	237	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U0Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U0Y