Analysis of interatomic Contacts of Structural Units in PDB entry:
8U0Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U0Z entry

There are 2 chains in PDB entry 8U0Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 222CYS 481
B
 PHE 222CYS 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8U0Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
225 230Right-handed alpha
Helix 2
AA2
A
231 233Right-handed 310
Helix 3
AA3
A
235 249Right-handed alpha
Helix 4
AA4
A
260 272Right-handed alpha
Helix 5
AA5
A
273 275Right-handed 310
Helix 6
AA6
A
281 285Right-handed 310
Helix 7
AA7
A
291 304Right-handed alpha
Helix 8
AA8
A
316 326Right-handed alpha
Helix 9
AA9
A
330 334Right-handed 310
Helix 10
AB1
A
346 357Right-handed alpha
Helix 11
AB2
A
358 360Right-handed 310
Helix 12
AB3
A
377 390Right-handed alpha
Helix 13
AB4
A
402 406Right-handed 310
Helix 14
AB5
A
437 443Right-handed alpha
Helix 15
AB6
A
453 458Right-handed alpha
Helix 16
AB7
A
461 479Right-handed alpha
Helix 17
AB8
B
225 230Right-handed alpha
Helix 18
AB9
B
235 249Right-handed alpha
Helix 19
AC1
B
260 272Right-handed alpha
Helix 20
AC2
B
273 275Right-handed 310
Helix 21
AC3
B
281 285Right-handed 310
Helix 22
AC4
B
291 304Right-handed alpha
Helix 23
AC5
B
316 326Right-handed alpha
Helix 24
AC6
B
330 334Right-handed 310
Helix 25
AC7
B
346 357Right-handed alpha
Helix 26
AC8
B
377 391Right-handed alpha
Helix 27
AC9
B
402 406Right-handed 310
Helix 28
AD1
B
437 443Right-handed alpha
Helix 29
AD2
B
453 458Right-handed alpha
Helix 30
AD3
B
461 481Right-handed alpha
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There are 3 sheets in PDB entry 8U0Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 255first strand
Strand 2
A
277 280parallel
Strand 3
A
306 313parallel
Strand 4
A
337 340parallel
Strand 5
A
362 366parallel
Strand 6
A
395 399parallel
Strand 7
A
416 419parallel
Strand 8
A
449 452parallel
Strand 9
A
252 255parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
434 435anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
252 255first strand
Strand 2
B
277 280parallel
Strand 3
B
306 313parallel
Strand 4
B
337 340parallel
Strand 5
B
362 366parallel
Strand 6
B
395 399parallel
Strand 7
B
416 419parallel
Strand 8
B
449 452parallel
Strand 9
B
252 255parallel
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