Analysis of interatomic Contacts of Structural Units in PDB entry:
8U17

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U17 entry

There are 4 chains in PDB entry 8U17 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 72	PRO 427
B	SER 2	ILE 1139
C	LYS 381	GLN 434
D	THR 71	ARG 295

There are 40 helices in PDB entry 8U17. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	116	Right-handed alpha
Helix 2	AA2	A	202	207	Right-handed 310
Helix 3	AA3	A	222	233	Right-handed alpha
Helix 4	AA4	A	234	238	Right-handed 310
Helix 5	AA5	A	241	247	Right-handed alpha
Helix 6	AA6	A	249	265	Right-handed alpha
Helix 7	AA7	A	276	287	Right-handed alpha
Helix 8	AA8	A	291	301	Right-handed alpha
Helix 9	AA9	A	303	318	Right-handed alpha
Helix 10	AB1	A	335	337	Right-handed 310
Helix 11	AB2	B	250	254	Right-handed 310
Helix 12	AB3	B	381	384	Right-handed 310
Helix 13	AB4	B	1044	1059	Right-handed alpha
Helix 14	AB5	B	1069	1075	Right-handed alpha
Helix 15	AB6	B	1090	1095	Right-handed alpha
Helix 16	AB7	B	1101	1109	Right-handed alpha
Helix 17	AB8	B	1127	1138	Right-handed alpha
Helix 18	AB9	C	393	402	Right-handed alpha
Helix 19	AC1	C	421	431	Right-handed alpha
Helix 20	AC2	D	103	116	Right-handed alpha
Helix 21	AC3	D	202	207	Right-handed 310
Helix 22	AC4	D	222	232	Right-handed alpha
Helix 23	AC5	D	233	238	Right-handed 310
Helix 24	AC6	D	241	247	Right-handed alpha
Helix 25	AC7	D	249	265	Right-handed alpha
Helix 26	AC8	D	269	273	Right-handed 310
Helix 27	AC9	D	276	287	Right-handed alpha
Helix 28	AD1	D	291	301	Right-handed alpha
Helix 29	AD2	D	303	318	Right-handed alpha
Helix 30	AD3	D	335	337	Right-handed 310
Helix 31	AD4	D	420	422	Right-handed 310
Helix 32	AD5	E	250	254	Right-handed 310
Helix 33	AD6	E	381	384	Right-handed 310
Helix 34	AD7	E	1044	1059	Right-handed alpha
Helix 35	AD8	E	1069	1075	Right-handed alpha
Helix 36	AD9	E	1090	1095	Right-handed alpha
Helix 37	AE1	E	1101	1109	Right-handed alpha
Helix 38	AE2	E	1126	1139	Right-handed alpha
Helix 39	AE3	F	393	402	Right-handed alpha
Helix 40	AE4	F	421	431	Right-handed alpha

There are 46 sheets in PDB entry 8U17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	180	184	anti-parallel
Strand 3	A	152	169	anti-parallel
Strand 4	A	96	98	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	81	first strand
Strand 2	A	180	184	anti-parallel
Strand 3	A	152	169	anti-parallel
Strand 4	A	135	149	anti-parallel
Strand 5	A	119	123	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	333	first strand
Strand 2	A	320	323	anti-parallel
Strand 3	A	422	425	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	350	first strand
Strand 2	A	356	362	anti-parallel
Strand 3	A	414	418	anti-parallel
Strand 4	A	397	402	anti-parallel
Strand 5	A	386	390	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	10	first strand
Strand 2	B	1037	1043	anti-parallel
Strand 3	B	1025	1032	anti-parallel
Strand 4	B	1004	1009	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	30	35	anti-parallel
Strand 3	B	38	44	anti-parallel
Strand 4	B	49	56	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	67	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	85	94	anti-parallel
Strand 4	B	97	107	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	130	136	anti-parallel
Strand 3	B	139	144	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	169	first strand
Strand 2	B	177	184	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	201	203	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	169	first strand
Strand 2	B	177	184	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	208	209	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	237	241	anti-parallel
Strand 4	B	244	248	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	263	first strand
Strand 2	B	270	274	anti-parallel
Strand 3	B	279	286	anti-parallel
Strand 4	B	299	307	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	318	first strand
Strand 2	B	321	326	anti-parallel
Strand 3	B	331	336	anti-parallel
Strand 4	B	347	353	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	361	363	first strand
Strand 2	B	375	379	anti-parallel
Strand 3	B	386	390	anti-parallel
Strand 4	B	715	716	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	743	anti-parallel
Strand 3	B	749	751	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	743	anti-parallel
Strand 3	B	785	795	anti-parallel
Strand 4	B	801	806	anti-parallel
Strand 5	B	762	765	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	821	first strand
Strand 2	B	824	835	anti-parallel
Strand 3	B	846	853	anti-parallel
Strand 4	B	858	866	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	870	875	first strand
Strand 2	B	879	884	anti-parallel
Strand 3	B	887	893	anti-parallel
Strand 4	B	899	905	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	913	917	first strand
Strand 2	B	920	924	anti-parallel
Strand 3	B	930	936	anti-parallel
Strand 4	B	941	948	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	954	959	first strand
Strand 2	B	965	969	anti-parallel
Strand 3	B	973	978	anti-parallel
Strand 4	B	993	999	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1076	1077	first strand
Strand 2	B	1082	1083	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	411	first strand
Strand 2	C	418	419	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	81	first strand
Strand 2	D	178	184	anti-parallel
Strand 3	D	152	172	anti-parallel
Strand 4	D	96	98	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	81	first strand
Strand 2	D	178	184	anti-parallel
Strand 3	D	152	172	anti-parallel
Strand 4	D	135	149	anti-parallel
Strand 5	D	119	123	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	333	first strand
Strand 2	D	320	322	anti-parallel
Strand 3	D	423	425	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	350	first strand
Strand 2	D	356	360	anti-parallel
Strand 3	D	415	418	anti-parallel
Strand 4	D	397	401	anti-parallel
Strand 5	D	384	390	anti-parallel
Strand 6	D	371	375	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	350	first strand
Strand 2	D	356	360	anti-parallel
Strand 3	D	415	418	anti-parallel
Strand 4	D	397	401	anti-parallel
Strand 5	D	384	390	anti-parallel
Strand 6	D	403	404	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	10	first strand
Strand 2	E	1037	1043	anti-parallel
Strand 3	E	1025	1032	anti-parallel
Strand 4	E	1004	1009	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	21	first strand
Strand 2	E	30	35	anti-parallel
Strand 3	E	38	44	anti-parallel
Strand 4	E	49	56	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	67	first strand
Strand 2	E	76	81	anti-parallel
Strand 3	E	85	94	anti-parallel
Strand 4	E	97	107	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	124	first strand
Strand 2	E	130	136	anti-parallel
Strand 3	E	139	144	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	169	first strand
Strand 2	E	177	184	anti-parallel
Strand 3	E	187	195	anti-parallel
Strand 4	E	202	203	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	169	first strand
Strand 2	E	177	184	anti-parallel
Strand 3	E	187	195	anti-parallel
Strand 4	E	208	209	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	221	first strand
Strand 2	E	229	232	anti-parallel
Strand 3	E	237	241	anti-parallel
Strand 4	E	244	248	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	263	first strand
Strand 2	E	270	274	anti-parallel
Strand 3	E	279	286	anti-parallel
Strand 4	E	299	307	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	318	first strand
Strand 2	E	321	325	anti-parallel
Strand 3	E	331	336	anti-parallel
Strand 4	E	347	353	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	361	363	first strand
Strand 2	E	375	379	anti-parallel
Strand 3	E	386	390	anti-parallel
Strand 4	E	712	716	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	720	727	first strand
Strand 2	E	732	743	anti-parallel
Strand 3	E	749	751	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	720	727	first strand
Strand 2	E	732	743	anti-parallel
Strand 3	E	785	795	anti-parallel
Strand 4	E	801	806	anti-parallel
Strand 5	E	762	765	parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	813	819	first strand
Strand 2	E	828	833	anti-parallel
Strand 3	E	846	853	anti-parallel
Strand 4	E	858	866	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	870	875	first strand
Strand 2	E	879	884	anti-parallel
Strand 3	E	887	893	anti-parallel
Strand 4	E	899	905	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	913	917	first strand
Strand 2	E	920	924	anti-parallel
Strand 3	E	930	936	anti-parallel
Strand 4	E	941	942	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	913	917	first strand
Strand 2	E	920	924	anti-parallel
Strand 3	E	930	936	anti-parallel
Strand 4	E	946	948	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	956	959	first strand
Strand 2	E	965	968	anti-parallel
Strand 3	E	973	978	anti-parallel
Strand 4	E	993	999	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1076	1077	first strand
Strand 2	E	1082	1083	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	410	411	first strand
Strand 2	F	418	419	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U17

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U17