Analysis of interatomic Contacts of Structural Units in PDB entry:
8U1B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U1B entry

There are 2 chains in PDB entry 8U1B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1952MET 2521
C
 LEU 16ALA 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 8U1B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1956 1961Right-handed alpha
Helix 2
AA2
A
1967 1988Right-handed alpha
Helix 3
AA3
A
1996 2000Right-handed 310
Helix 4
AA4
A
2053 2068Right-handed alpha
Helix 5
AA5
A
2094 2099Right-handed alpha
Helix 6
AA6
A
2107 2115Right-handed alpha
Helix 7
AA7
A
2124 2133Right-handed alpha
Helix 8
AA8
A
2134 2139Right-handed alpha
Helix 9
AA9
A
2208 2211Right-handed 310
Helix 10
AB1
A
2276 2280Right-handed 310
Helix 11
AB2
A
2337 2344Right-handed 310
Helix 12
AB3
A
2346 2351Right-handed alpha
Helix 13
AB4
A
2389 2394Right-handed alpha
Helix 14
AB5
A
2499 2521Right-handed alpha
Helix 15
AB6
C
17 27Right-handed alpha
Helix 16
AB7
C
51 60Right-handed alpha
Helix 17
AB8
C
63 68Right-handed alpha
Helix 18
AB9
C
86 93Right-handed alpha
Helix 19
AC1
C
95 105Right-handed alpha
Helix 20
AC2
C
117 125Right-handed alpha
Helix 21
AC3
C
127 137Right-handed alpha
Helix 22
AC4
C
150 158Right-handed alpha
Helix 23
AC5
C
160 171Right-handed alpha
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There are 8 sheets in PDB entry 8U1B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2142 2145first strand
Strand 2
A
2492 2495anti-parallel
Strand 3
A
2469 2474anti-parallel
Strand 4
A
2457 2461anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2154 2156first strand
Strand 2
A
2167 2171anti-parallel
Strand 3
A
2178 2182anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2199 2207first strand
Strand 2
A
2212 2219anti-parallel
Strand 3
A
2225 2228anti-parallel
Strand 4
A
2236 2237anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2247 2249first strand
Strand 2
A
2264 2266anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2272 2274first strand
Strand 2
A
2289 2291anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2304 2305first strand
Strand 2
A
2315 2318anti-parallel
Strand 3
A
2323 2325anti-parallel
Strand 4
A
2335 2336anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2354 2359first strand
Strand 2
A
2362 2367anti-parallel
Strand 3
A
2372 2377anti-parallel
Strand 4
A
2382 2388anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2417 2419first strand
Strand 2
A
2425 2427anti-parallel
Strand 3
A
2435 2437anti-parallel
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