Analysis of interatomic Contacts of Structural Units in PDB entry:
8U1D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U1D entry

There are 3 chains in PDB entry 8U1D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 46VAL 487
I
 GLN 1SER 113
J
 ASP 1LYS 107
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8U1D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 70Right-handed alpha
Helix 2
AA2
A
71 73Right-handed 310
Helix 3
AA3
A
99 115Right-handed alpha
Helix 4
AA4
A
122 126Right-handed 310
Helix 5
AA5
A
138 142Right-handed 310
Helix 6
AA6
A
205 209Right-handed 310
Helix 7
AA7
A
334 350Right-handed alpha
Helix 8
AA8
A
368 373Right-handed alpha
Helix 9
AA9
A
388 392Right-handed 310
Helix 10
AB1
A
473 478Right-handed alpha
Helix 11
AB2
I
28 32Right-handed 310
Helix 12
AB3
I
83 87Right-handed 310
Helix 13
AB4
J
79 83Right-handed 310
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There are 14 sheets in PDB entry 8U1D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
242 245anti-parallel
Strand 3
A
224 228anti-parallel
Strand 4
A
486 487anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
236 238anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 174first strand
Strand 2
A
157 161anti-parallel
Strand 3
A
129 131anti-parallel
Strand 4
A
190 193anti-parallel
Strand 5
A
181 183anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
432 435parallel
Strand 3
A
423 424anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
443 452anti-parallel
Strand 3
A
285 298anti-parallel
Strand 4
A
271 273anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
443 452anti-parallel
Strand 3
A
285 298anti-parallel
Strand 4
A
329 333anti-parallel
Strand 5
A
414 421anti-parallel
Strand 6
A
381 385anti-parallel
Strand 7
A
374 378anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 307first strand
Strand 2
A
317 323anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
357 361first strand
Strand 2
A
463 468parallel
Strand 3
A
454 458anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
3 6first strand
Strand 2
I
17 25anti-parallel
Strand 3
I
77 82anti-parallel
Strand 4
I
67 72anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
57 58first strand
Strand 2
I
45 51anti-parallel
Strand 3
I
34 39anti-parallel
Strand 4
I
88 94anti-parallel
Strand 5
I
102 103anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
57 58first strand
Strand 2
I
45 51anti-parallel
Strand 3
I
34 39anti-parallel
Strand 4
I
88 94anti-parallel
Strand 5
I
107 109anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
5 6first strand
Strand 2
J
18 24anti-parallel
Strand 3
J
70 76anti-parallel
Strand 4
J
62 67anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
10 13first strand
Strand 2
J
103 106parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
53 54first strand
Strand 2
J
45 49anti-parallel
Strand 3
J
33 38anti-parallel
Strand 4
J
85 90anti-parallel
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