Analysis of interatomic Contacts of Structural Units in PDB entry:
8U1F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U1F entry

There are 2 chains in PDB entry 8U1F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 460THR 764
B
 PRO 472THR 765
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8U1F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
477 481Right-handed 310
Helix 2
AA2
A
524 542Right-handed alpha
Helix 3
AA3
A
572 579Right-handed alpha
Helix 4
AA4
A
599 620Right-handed alpha
Helix 5
AA5
A
628 630Right-handed 310
Helix 6
AA6
A
671 677Right-handed alpha
Helix 7
AA7
A
681 698Right-handed alpha
Helix 8
AA8
A
708 718Right-handed alpha
Helix 9
AA9
A
729 740Right-handed alpha
Helix 10
AB1
A
743 747Right-handed 310
Helix 11
AB2
A
749 763Right-handed alpha
Helix 12
AB3
B
477 481Right-handed 310
Helix 13
AB4
B
524 542Right-handed alpha
Helix 14
AB5
B
571 578Right-handed alpha
Helix 15
AB6
B
599 620Right-handed alpha
Helix 16
AB7
B
666 670Right-handed 310
Helix 17
AB8
B
671 676Right-handed alpha
Helix 18
AB9
B
681 698Right-handed alpha
Helix 19
AC1
B
708 718Right-handed alpha
Helix 20
AC2
B
729 740Right-handed alpha
Helix 21
AC3
B
743 747Right-handed 310
Helix 22
AC4
B
749 762Right-handed alpha
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There are 4 sheets in PDB entry 8U1F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 486first strand
Strand 2
A
494 501anti-parallel
Strand 3
A
511 518anti-parallel
Strand 4
A
561 565anti-parallel
Strand 5
A
550 554anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 571first strand
Strand 2
A
632 634anti-parallel
Strand 3
A
640 642anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
494 501first strand
Strand 2
B
511 518anti-parallel
Strand 3
B
561 564anti-parallel
Strand 4
B
550 554anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
632 634first strand
Strand 2
B
640 642anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il