Analysis of interatomic Contacts of Structural Units in PDB entry:
8U1H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U1H entry

There are 7 chains in PDB entry 8U1H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 27	VAL 500
B	ASP 27	THR 478
C	SER 26	PHE 498
D	ARG 3	VAL 471
E	ARG 3	MET 469
F	THR 2	MET 469
G	ILE 6	LEU 257

There are113 helices in PDB entry 8U1H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	150	157	Right-handed alpha
Helix 2	AA2	A	174	186	Right-handed alpha
Helix 3	AA3	A	187	189	Right-handed 310
Helix 4	AA4	A	201	215	Right-handed alpha
Helix 5	AA5	A	231	252	Right-handed alpha
Helix 6	AA6	A	263	276	Right-handed alpha
Helix 7	AA7	A	289	299	Right-handed alpha
Helix 8	AA8	A	305	309	Right-handed 310
Helix 9	AA9	A	328	338	Right-handed alpha
Helix 10	AB1	A	345	351	Right-handed alpha
Helix 11	AB2	A	366	370	Right-handed 310
Helix 12	AB3	A	372	391	Right-handed alpha
Helix 13	AB4	A	392	397	Right-handed alpha
Helix 14	AB5	A	403	421	Right-handed alpha
Helix 15	AB6	A	429	442	Right-handed alpha
Helix 16	AB7	A	444	448	Right-handed 310
Helix 17	AB8	A	449	451	Right-handed 310
Helix 18	AB9	A	452	468	Right-handed alpha
Helix 19	AC1	A	468	479	Right-handed alpha
Helix 20	AC2	A	483	498	Right-handed alpha
Helix 21	AC3	B	150	156	Right-handed alpha
Helix 22	AC4	B	174	186	Right-handed alpha
Helix 23	AC5	B	201	215	Right-handed alpha
Helix 24	AC6	B	216	219	Right-handed 310
Helix 25	AC7	B	231	252	Right-handed alpha
Helix 26	AC8	B	262	277	Right-handed alpha
Helix 27	AC9	B	289	299	Right-handed alpha
Helix 28	AD1	B	322	325	Right-handed 310
Helix 29	AD2	B	328	338	Right-handed alpha
Helix 30	AD3	B	366	370	Right-handed 310
Helix 31	AD4	B	372	379	Right-handed alpha
Helix 32	AD5	B	381	393	Right-handed alpha
Helix 33	AD6	B	407	420	Right-handed alpha
Helix 34	AD7	B	429	440	Right-handed alpha
Helix 35	AD8	B	458	467	Right-handed alpha
Helix 36	AD9	B	471	478	Right-handed alpha
Helix 37	AE1	C	78	82	Right-handed 310
Helix 38	AE2	C	100	104	Right-handed 310
Helix 39	AE3	C	150	157	Right-handed alpha
Helix 40	AE4	C	174	186	Right-handed alpha
Helix 41	AE5	C	201	215	Right-handed alpha
Helix 42	AE6	C	216	219	Right-handed 310
Helix 43	AE7	C	231	251	Right-handed alpha
Helix 44	AE8	C	262	277	Right-handed alpha
Helix 45	AE9	C	289	299	Right-handed alpha
Helix 46	AF1	C	328	338	Right-handed alpha
Helix 47	AF2	C	345	351	Right-handed alpha
Helix 48	AF3	C	366	371	Right-handed 310
Helix 49	AF4	C	372	391	Right-handed alpha
Helix 50	AF5	C	392	402	Right-handed 310
Helix 51	AF6	C	403	420	Right-handed alpha
Helix 52	AF7	C	429	442	Right-handed alpha
Helix 53	AF8	C	449	451	Right-handed 310
Helix 54	AF9	C	452	468	Right-handed alpha
Helix 55	AG1	C	468	479	Right-handed alpha
Helix 56	AG2	C	483	498	Right-handed alpha
Helix 57	AG3	D	139	146	Right-handed alpha
Helix 58	AG4	D	163	179	Right-handed alpha
Helix 59	AG5	D	191	205	Right-handed alpha
Helix 60	AG6	D	206	209	Right-handed 310
Helix 61	AG7	D	221	244	Right-handed alpha
Helix 62	AG8	D	253	269	Right-handed alpha
Helix 63	AG9	D	280	290	Right-handed alpha
Helix 64	AH1	D	309	312	Right-handed 310
Helix 65	AH2	D	315	322	Right-handed alpha
Helix 66	AH3	D	332	338	Right-handed alpha
Helix 67	AH4	D	355	360	Right-handed alpha
Helix 68	AH5	D	360	387	Right-handed alpha
Helix 69	AH6	D	388	392	Right-handed 310
Helix 70	AH7	D	393	410	Right-handed alpha
Helix 71	AH8	D	429	442	Right-handed alpha
Helix 72	AH9	D	449	454	Right-handed 310
Helix 73	AI1	D	458	469	Right-handed alpha
Helix 74	AI2	E	88	92	Right-handed 310
Helix 75	AI3	E	124	128	Right-handed 310
Helix 76	AI4	E	139	146	Right-handed alpha
Helix 77	AI5	E	163	180	Right-handed alpha
Helix 78	AI6	E	191	206	Right-handed alpha
Helix 79	AI7	E	221	242	Right-handed alpha
Helix 80	AI8	E	254	269	Right-handed alpha
Helix 81	AI9	E	280	290	Right-handed alpha
Helix 82	AJ1	E	315	325	Right-handed alpha
Helix 83	AJ2	E	332	337	Right-handed alpha
Helix 84	AJ3	E	355	381	Right-handed alpha
Helix 85	AJ4	E	393	410	Right-handed alpha
Helix 86	AJ5	E	429	442	Right-handed alpha
Helix 87	AJ6	E	449	454	Right-handed 310
Helix 88	AJ7	E	459	469	Right-handed alpha
Helix 89	AJ8	F	139	146	Right-handed alpha
Helix 90	AJ9	F	163	175	Right-handed alpha
Helix 91	AK1	F	191	205	Right-handed alpha
Helix 92	AK2	F	207	209	Right-handed 310
Helix 93	AK3	F	221	242	Right-handed alpha
Helix 94	AK4	F	254	264	Right-handed alpha
Helix 95	AK5	F	264	269	Right-handed alpha
Helix 96	AK6	F	273	277	Right-handed 310
Helix 97	AK7	F	280	290	Right-handed alpha
Helix 98	AK8	F	309	312	Right-handed 310
Helix 99	AK9	F	315	322	Right-handed alpha
Helix 100	AL1	F	323	325	Right-handed 310
Helix 101	AL2	F	332	338	Right-handed alpha
Helix 102	AL3	F	355	360	Right-handed alpha
Helix 103	AL4	F	360	387	Right-handed alpha
Helix 104	AL5	F	393	410	Right-handed alpha
Helix 105	AL6	F	417	422	Right-handed alpha
Helix 106	AL7	F	429	443	Right-handed alpha
Helix 107	AL8	F	449	454	Right-handed 310
Helix 108	AL9	F	458	468	Right-handed alpha
Helix 109	AM1	G	7	42	Right-handed alpha
Helix 110	AM2	G	89	106	Right-handed alpha
Helix 111	AM3	G	121	129	Right-handed alpha
Helix 112	AM4	G	144	157	Right-handed alpha
Helix 113	AM5	G	220	257	Right-handed alpha

There are 25 sheets in PDB entry 8U1H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	34	first strand
Strand 2	A	38	42	anti-parallel
Strand 3	A	71	75	anti-parallel
Strand 4	A	60	66	anti-parallel
Strand 5	A	51	55	anti-parallel
Strand 6	A	87	94	anti-parallel
Strand 7	A	28	34	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	98	first strand
Strand 2	A	126	128	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	108	first strand
Strand 2	A	221	227	parallel
Strand 3	A	191	200	parallel
Strand 4	A	255	260	parallel
Strand 5	A	312	316	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	320	first strand
Strand 2	A	166	169	parallel
Strand 3	A	340	344	parallel
Strand 4	A	363	364	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	34	first strand
Strand 2	B	38	42	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	60	66	anti-parallel
Strand 5	B	51	55	anti-parallel
Strand 6	B	87	94	anti-parallel
Strand 7	B	29	34	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	99	first strand
Strand 2	B	125	128	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	107	108	first strand
Strand 2	B	221	226	parallel
Strand 3	B	191	198	parallel
Strand 4	B	255	260	parallel
Strand 5	B	312	316	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	320	first strand
Strand 2	B	166	169	parallel
Strand 3	B	340	344	parallel
Strand 4	B	363	364	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	35	first strand
Strand 2	C	38	42	anti-parallel
Strand 3	C	71	75	anti-parallel
Strand 4	C	60	66	anti-parallel
Strand 5	C	51	55	anti-parallel
Strand 6	C	87	90	anti-parallel
Strand 7	C	28	35	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	99	first strand
Strand 2	C	125	128	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	107	108	first strand
Strand 2	C	221	226	parallel
Strand 3	C	191	198	parallel
Strand 4	C	255	260	parallel
Strand 5	C	312	316	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	320	first strand
Strand 2	C	165	169	parallel
Strand 3	C	340	344	parallel
Strand 4	C	363	364	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	10	first strand
Strand 2	D	13	17	anti-parallel
Strand 3	D	58	63	anti-parallel
Strand 4	D	44	53	anti-parallel
Strand 5	D	28	34	anti-parallel
Strand 6	D	75	82	anti-parallel
Strand 7	D	4	10	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	86	first strand
Strand 2	D	115	117	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	96	first strand
Strand 2	D	211	217	parallel
Strand 3	D	182	190	parallel
Strand 4	D	247	251	parallel
Strand 5	D	300	307	parallel
Strand 6	D	153	158	parallel
Strand 7	D	327	330	parallel
Strand 8	D	350	351	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	134	135	first strand
Strand 2	D	148	149	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	9	first strand
Strand 2	E	13	17	anti-parallel
Strand 3	E	58	63	anti-parallel
Strand 4	E	44	55	anti-parallel
Strand 5	E	29	34	anti-parallel
Strand 6	E	75	78	anti-parallel
Strand 7	E	4	9	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	86	first strand
Strand 2	E	115	117	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	95	96	first strand
Strand 2	E	211	216	parallel
Strand 3	E	183	188	parallel
Strand 4	E	246	251	parallel
Strand 5	E	299	305	parallel
Strand 6	E	153	157	parallel
Strand 7	E	327	330	parallel
Strand 8	E	350	351	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	134	135	first strand
Strand 2	E	148	149	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	9	first strand
Strand 2	F	13	17	anti-parallel
Strand 3	F	58	63	anti-parallel
Strand 4	F	44	54	anti-parallel
Strand 5	F	29	34	anti-parallel
Strand 6	F	75	78	anti-parallel
Strand 7	F	4	9	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	84	86	first strand
Strand 2	F	115	117	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	96	first strand
Strand 2	F	211	216	parallel
Strand 3	F	182	188	parallel
Strand 4	F	247	251	parallel
Strand 5	F	300	307	parallel
Strand 6	F	153	158	parallel
Strand 7	F	327	330	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	134	135	first strand
Strand 2	F	148	149	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	79	first strand
Strand 2	G	169	173	parallel
Strand 3	G	181	185	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U1H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U1H