Analysis of interatomic Contacts of Structural Units in PDB entry:
8U1L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U1L entry

Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 8U1L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 10	ILE 689
B	GLY 10	ILE 689
C	ALA 418	LYS 615
D	VAL 2	VAL 12
D	ASP 14	GLU 137

There are 62 helices in PDB entry 8U1L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	32	Right-handed alpha
Helix 2	AA2	A	37	61	Right-handed alpha
Helix 3	AA3	A	62	68	Right-handed 310
Helix 4	AA4	A	94	103	Right-handed alpha
Helix 5	AA5	A	108	117	Right-handed alpha
Helix 6	AA6	A	131	138	Right-handed 310
Helix 7	AA7	A	187	193	Right-handed 310
Helix 8	AA8	A	194	206	Right-handed alpha
Helix 9	AA9	A	286	290	Right-handed 310
Helix 10	AB1	A	291	295	Right-handed 310
Helix 11	AB2	A	296	309	Right-handed alpha
Helix 12	AB3	A	370	374	Right-handed 310
Helix 13	AB4	A	397	420	Right-handed alpha
Helix 14	AB5	A	421	443	Right-handed alpha
Helix 15	AB6	A	446	453	Right-handed alpha
Helix 16	AB7	A	468	473	Right-handed alpha
Helix 17	AB8	A	489	495	Right-handed alpha
Helix 18	AB9	A	498	505	Right-handed alpha
Helix 19	AC1	A	516	524	Right-handed alpha
Helix 20	AC2	A	545	571	Right-handed alpha
Helix 21	AC3	A	572	574	Right-handed 310
Helix 22	AC4	A	598	608	Right-handed alpha
Helix 23	AC5	A	612	617	Right-handed alpha
Helix 24	AC6	A	618	620	Right-handed 310
Helix 25	AC7	A	631	644	Right-handed alpha
Helix 26	AC8	A	647	665	Right-handed alpha
Helix 27	AC9	A	671	688	Right-handed alpha
Helix 28	AD1	B	20	31	Right-handed alpha
Helix 29	AD2	B	35	37	Right-handed 310
Helix 30	AD3	B	38	59	Right-handed alpha
Helix 31	AD4	B	60	68	Right-handed 310
Helix 32	AD5	B	94	103	Right-handed alpha
Helix 33	AD6	B	108	117	Right-handed alpha
Helix 34	AD7	B	132	138	Right-handed 310
Helix 35	AD8	B	187	193	Right-handed 310
Helix 36	AD9	B	194	206	Right-handed alpha
Helix 37	AE1	B	291	295	Right-handed 310
Helix 38	AE2	B	296	309	Right-handed alpha
Helix 39	AE3	B	370	374	Right-handed 310
Helix 40	AE4	B	397	419	Right-handed alpha
Helix 41	AE5	B	421	443	Right-handed alpha
Helix 42	AE6	B	446	452	Right-handed alpha
Helix 43	AE7	B	468	474	Right-handed alpha
Helix 44	AE8	B	489	495	Right-handed alpha
Helix 45	AE9	B	498	505	Right-handed alpha
Helix 46	AF1	B	516	524	Right-handed alpha
Helix 47	AF2	B	545	571	Right-handed alpha
Helix 48	AF3	B	598	608	Right-handed alpha
Helix 49	AF4	B	631	644	Right-handed alpha
Helix 50	AF5	B	647	665	Right-handed alpha
Helix 51	AF6	B	671	688	Right-handed alpha
Helix 52	AF7	C	429	435	Right-handed alpha
Helix 53	AF8	C	441	462	Right-handed alpha
Helix 54	AF9	C	513	518	Right-handed alpha
Helix 55	AG1	C	526	544	Right-handed alpha
Helix 56	AG2	C	553	564	Right-handed alpha
Helix 57	AG3	C	569	573	Right-handed 310
Helix 58	AG4	C	578	589	Right-handed alpha
Helix 59	AG5	C	598	612	Right-handed alpha
Helix 60	AG6	D	24	48	Right-handed alpha
Helix 61	AG7	D	103	112	Right-handed alpha
Helix 62	AG8	D	115	119	Right-handed alpha

There are 14 sheets in PDB entry 8U1L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	B	164	169	anti-parallel
Strand 3	B	155	159	anti-parallel
Strand 4	B	140	148	anti-parallel
Strand 5	B	178	185	anti-parallel
Strand 6	B	83	88	anti-parallel
Strand 7	B	73	78	anti-parallel
Strand 8	B	213	218	parallel
Strand 9	B	275	278	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	19	first strand
Strand 2	B	104	105	parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	276	278	first strand
Strand 2	A	213	217	anti-parallel
Strand 3	A	73	78	parallel
Strand 4	A	83	88	anti-parallel
Strand 5	A	178	185	anti-parallel
Strand 6	A	140	148	anti-parallel
Strand 7	A	154	159	anti-parallel
Strand 8	A	164	169	anti-parallel
Strand 9	B	13	16	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	B	18	19	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	314	322	first strand
Strand 2	A	328	335	anti-parallel
Strand 3	A	377	382	anti-parallel
Strand 4	A	352	356	parallel
Strand 5	A	359	362	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	455	456	first strand
Strand 2	A	466	467	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	510	512	first strand
Strand 2	A	481	486	parallel
Strand 3	A	530	534	parallel
Strand 4	A	526	527	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	576	579	first strand
Strand 2	A	624	627	parallel
Strand 3	A	588	591	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	362	first strand
Strand 2	B	351	356	anti-parallel
Strand 3	B	377	382	parallel
Strand 4	B	328	335	anti-parallel
Strand 5	B	314	324	anti-parallel
Strand 6	D	120	123	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	362	first strand
Strand 2	B	351	356	anti-parallel
Strand 3	B	377	382	parallel
Strand 4	B	328	335	anti-parallel
Strand 5	B	314	324	anti-parallel
Strand 6	D	127	129	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	455	456	first strand
Strand 2	B	466	467	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	510	512	first strand
Strand 2	B	481	486	parallel
Strand 3	B	530	534	parallel
Strand 4	B	526	527	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	576	579	first strand
Strand 2	B	624	627	parallel
Strand 3	B	588	591	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	426	428	first strand
Strand 2	C	474	477	anti-parallel
Strand 3	C	482	484	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U1L

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U1L