Analysis of interatomic Contacts of Structural Units in PDB entry:
8U1R

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U1R entry

There are 3 chains in PDB entry 8U1R (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 22	GLY 429
B	SER 22	GLY 429
C	SER 22	GLY 429

There are 48 helices in PDB entry 8U1R. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	32	Right-handed alpha
Helix 2	AA2	A	67	99	Right-handed alpha
Helix 3	AA3	A	111	116	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	A	132	141	Right-handed alpha
Helix 6	AA6	A	142	148	Right-handed alpha
Helix 7	AA7	A	168	178	Right-handed alpha
Helix 8	AA8	A	179	182	Right-handed 310
Helix 9	AA9	A	186	209	Right-handed alpha
Helix 10	AB1	A	209	214	Right-handed alpha
Helix 11	AB2	A	222	228	Right-handed alpha
Helix 12	AB3	A	229	231	Right-handed 310
Helix 13	AB4	A	233	241	Right-handed alpha
Helix 14	AB5	A	248	253	Right-handed alpha
Helix 15	AB6	A	344	353	Right-handed alpha
Helix 16	AB7	A	354	358	Right-handed 310
Helix 17	AB8	B	24	32	Right-handed alpha
Helix 18	AB9	B	60	64	Right-handed 310
Helix 19	AC1	B	67	98	Right-handed alpha
Helix 20	AC2	B	112	116	Right-handed alpha
Helix 21	AC3	B	120	142	Right-handed alpha
Helix 22	AC4	B	142	148	Right-handed alpha
Helix 23	AC5	B	168	178	Right-handed alpha
Helix 24	AC6	B	179	182	Right-handed 310
Helix 25	AC7	B	186	209	Right-handed alpha
Helix 26	AC8	B	209	214	Right-handed alpha
Helix 27	AC9	B	223	228	Right-handed alpha
Helix 28	AD1	B	229	231	Right-handed 310
Helix 29	AD2	B	233	241	Right-handed alpha
Helix 30	AD3	B	248	254	Right-handed alpha
Helix 31	AD4	B	344	353	Right-handed alpha
Helix 32	AD5	B	354	358	Right-handed 310
Helix 33	AD6	C	24	32	Right-handed alpha
Helix 34	AD7	C	60	64	Right-handed 310
Helix 35	AD8	C	67	99	Right-handed alpha
Helix 36	AD9	C	112	116	Right-handed alpha
Helix 37	AE1	C	120	142	Right-handed alpha
Helix 38	AE2	C	142	148	Right-handed alpha
Helix 39	AE3	C	168	178	Right-handed alpha
Helix 40	AE4	C	179	182	Right-handed 310
Helix 41	AE5	C	186	209	Right-handed alpha
Helix 42	AE6	C	209	214	Right-handed alpha
Helix 43	AE7	C	223	228	Right-handed alpha
Helix 44	AE8	C	229	231	Right-handed 310
Helix 45	AE9	C	233	241	Right-handed alpha
Helix 46	AF1	C	248	254	Right-handed alpha
Helix 47	AF2	C	344	353	Right-handed alpha
Helix 48	AF3	C	354	358	Right-handed 310

There are 15 sheets in PDB entry 8U1R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	157	first strand
Strand 2	A	163	167	anti-parallel
Strand 3	A	33	55	parallel
Strand 4	A	287	293	anti-parallel
Strand 5	A	310	313	anti-parallel
Strand 6	A	318	320	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	265	first strand
Strand 2	A	270	282	anti-parallel
Strand 3	A	33	55	anti-parallel
Strand 4	A	332	335	parallel
Strand 5	A	327	328	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	119	first strand
Strand 2	B	371	374	anti-parallel
Strand 3	B	377	380	anti-parallel
Strand 4	B	405	407	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	298	first strand
Strand 2	A	301	306	anti-parallel
Strand 3	A	359	362	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	407	first strand
Strand 2	A	377	380	anti-parallel
Strand 3	A	371	374	anti-parallel
Strand 4	C	118	119	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	A	414	417	anti-parallel
Strand 3	A	420	423	anti-parallel
Strand 4	C	110	111	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	157	first strand
Strand 2	B	163	167	anti-parallel
Strand 3	B	33	55	parallel
Strand 4	B	332	335	parallel
Strand 5	B	327	328	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	258	265	anti-parallel
Strand 3	B	270	282	anti-parallel
Strand 4	B	33	55	anti-parallel
Strand 5	B	287	293	anti-parallel
Strand 6	B	310	313	anti-parallel
Strand 7	B	318	321	anti-parallel
Strand 8	B	340	341	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	C	420	423	parallel
Strand 3	C	414	417	anti-parallel
Strand 4	C	387	389	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	119	first strand
Strand 2	C	371	374	anti-parallel
Strand 3	C	377	380	anti-parallel
Strand 4	C	405	407	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	298	first strand
Strand 2	B	301	306	anti-parallel
Strand 3	B	359	362	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	389	first strand
Strand 2	B	414	417	anti-parallel
Strand 3	B	420	423	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	157	first strand
Strand 2	C	163	167	anti-parallel
Strand 3	C	33	55	parallel
Strand 4	C	332	335	parallel
Strand 5	C	327	328	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	258	265	anti-parallel
Strand 3	C	270	282	anti-parallel
Strand 4	C	33	55	anti-parallel
Strand 5	C	287	293	anti-parallel
Strand 6	C	310	313	anti-parallel
Strand 7	C	318	321	anti-parallel
Strand 8	C	340	341	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	298	first strand
Strand 2	C	301	306	anti-parallel
Strand 3	C	359	362	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U1R

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U1R