Analysis of interatomic Contacts of Structural Units in PDB entry:
8U1S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U1S entry

There are 12 chains in PDB entry 8U1S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 78	LEU 455
J	GLN 3	SER 113
K	ASP 1	LYS 107
G	GLN 3	SER 113
I	ASP 1	LYS 107
E	GLN 3	SER 113
F	ASP 1	LYS 107
H	GLN 3	SER 113
L	ASP 1	LYS 107
B	PRO 78	LEU 454
C	PRO 78	LEU 454
D	PRO 78	LEU 455

There are 13 helices in PDB entry 8U1S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	386	390	Right-handed 310
Helix 2	AA2	J	63	67	Right-handed 310
Helix 3	AA3	K	79	83	Right-handed 310
Helix 4	AA4	G	61	67	Right-handed 310
Helix 5	AA5	G	73	75	Right-handed 310
Helix 6	AA6	I	79	83	Right-handed 310
Helix 7	AA7	E	63	65	Right-handed 310
Helix 8	AA8	E	73	75	Right-handed 310
Helix 9	AA9	F	79	83	Right-handed 310
Helix 10	AB1	H	73	75	Right-handed 310
Helix 11	AB2	H	97	100	Right-handed alpha
Helix 12	AB3	L	79	83	Right-handed 310
Helix 13	AB4	B	386	390	Right-handed 310

There are 45 sheets in PDB entry 8U1S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	98	first strand
Strand 2	A	442	447	anti-parallel
Strand 3	A	421	429	anti-parallel
Strand 4	A	410	416	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	122	first strand
Strand 2	A	127	133	anti-parallel
Strand 3	A	155	160	anti-parallel
Strand 4	A	171	175	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	183	first strand
Strand 2	A	188	194	anti-parallel
Strand 3	A	201	206	anti-parallel
Strand 4	A	209	215	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	224	first strand
Strand 2	A	235	242	anti-parallel
Strand 3	A	230	232	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	224	first strand
Strand 2	A	235	242	anti-parallel
Strand 3	A	250	257	anti-parallel
Strand 4	A	260	265	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	269	first strand
Strand 2	A	311	316	parallel
Strand 3	A	301	306	anti-parallel
Strand 4	A	286	292	anti-parallel
Strand 5	A	275	283	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	356	first strand
Strand 2	A	361	367	anti-parallel
Strand 3	A	375	383	anti-parallel
Strand 4	A	395	406	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	7	first strand
Strand 2	J	18	24	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	70	72	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	107	111	parallel
Strand 3	J	88	96	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	46	52	anti-parallel
Strand 6	J	57	59	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	5	7	first strand
Strand 2	K	20	24	anti-parallel
Strand 3	K	70	74	anti-parallel
Strand 4	K	63	65	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	13	first strand
Strand 2	K	102	106	parallel
Strand 3	K	85	89	anti-parallel
Strand 4	K	34	38	anti-parallel
Strand 5	K	45	48	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	21	24	anti-parallel
Strand 3	G	77	79	anti-parallel
Strand 4	G	70	72	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	12	first strand
Strand 2	G	107	111	parallel
Strand 3	G	88	93	anti-parallel
Strand 4	G	35	39	anti-parallel
Strand 5	G	46	52	anti-parallel
Strand 6	G	57	59	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	7	first strand
Strand 2	I	20	25	anti-parallel
Strand 3	I	70	74	anti-parallel
Strand 4	I	63	66	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	84	89	anti-parallel
Strand 4	I	34	38	anti-parallel
Strand 5	I	45	48	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	18	24	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	72	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	96	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	52	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	5	7	first strand
Strand 2	F	20	24	anti-parallel
Strand 3	F	70	74	anti-parallel
Strand 4	F	63	67	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	13	first strand
Strand 2	F	102	106	parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	33	38	anti-parallel
Strand 5	F	45	48	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	18	24	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	96	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	102	107	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	48	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	98	first strand
Strand 2	B	442	447	anti-parallel
Strand 3	B	421	429	anti-parallel
Strand 4	B	410	416	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	123	first strand
Strand 2	B	126	133	anti-parallel
Strand 3	B	155	160	anti-parallel
Strand 4	B	171	175	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	183	first strand
Strand 2	B	188	194	anti-parallel
Strand 3	B	201	206	anti-parallel
Strand 4	B	209	214	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	235	241	anti-parallel
Strand 3	B	230	232	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	224	first strand
Strand 2	B	235	241	anti-parallel
Strand 3	B	251	257	anti-parallel
Strand 4	B	260	265	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	268	269	first strand
Strand 2	B	311	316	parallel
Strand 3	B	301	306	anti-parallel
Strand 4	B	286	292	anti-parallel
Strand 5	B	275	283	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	356	first strand
Strand 2	B	361	367	anti-parallel
Strand 3	B	377	383	anti-parallel
Strand 4	B	395	401	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	98	first strand
Strand 2	C	443	447	anti-parallel
Strand 3	C	421	428	anti-parallel
Strand 4	C	410	416	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	123	first strand
Strand 2	C	126	133	anti-parallel
Strand 3	C	155	160	anti-parallel
Strand 4	C	171	175	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	183	first strand
Strand 2	C	188	194	anti-parallel
Strand 3	C	201	206	anti-parallel
Strand 4	C	209	214	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	235	242	anti-parallel
Strand 3	C	230	232	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	224	first strand
Strand 2	C	235	242	anti-parallel
Strand 3	C	250	257	anti-parallel
Strand 4	C	260	265	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	268	269	first strand
Strand 2	C	312	316	parallel
Strand 3	C	301	306	anti-parallel
Strand 4	C	286	292	anti-parallel
Strand 5	C	275	283	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	356	first strand
Strand 2	C	361	367	anti-parallel
Strand 3	C	375	383	anti-parallel
Strand 4	C	395	406	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	98	first strand
Strand 2	D	442	448	anti-parallel
Strand 3	D	421	429	anti-parallel
Strand 4	D	412	416	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	123	first strand
Strand 2	D	126	133	anti-parallel
Strand 3	D	155	160	anti-parallel
Strand 4	D	170	175	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	183	first strand
Strand 2	D	188	194	anti-parallel
Strand 3	D	201	206	anti-parallel
Strand 4	D	209	214	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	223	first strand
Strand 2	D	235	242	anti-parallel
Strand 3	D	230	232	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	223	first strand
Strand 2	D	235	242	anti-parallel
Strand 3	D	250	257	anti-parallel
Strand 4	D	260	265	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	269	first strand
Strand 2	D	312	316	parallel
Strand 3	D	301	306	anti-parallel
Strand 4	D	286	292	anti-parallel
Strand 5	D	275	283	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	354	first strand
Strand 2	D	362	367	anti-parallel
Strand 3	D	375	383	anti-parallel
Strand 4	D	395	406	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U1S

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U1S