Analysis of interatomic Contacts of Structural Units in PDB entry:
8U1U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U1U entry

There are 5 chains in PDB entry 8U1U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 24ILE 410
B
 THR 4PHE 354
C
 GLU 3ASN 340
D
 ALA 7ARG 62
E
 ASP 4LEU 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8U1U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 88Right-handed alpha
Helix 2
AA2
A
127 159Right-handed alpha
Helix 3
AA3
A
164 182Right-handed alpha
Helix 4
AA4
A
183 193Right-handed alpha
Helix 5
AA5
A
197 233Right-handed alpha
Helix 6
AA6
A
233 238Right-handed alpha
Helix 7
AA7
A
242 267Right-handed alpha
Helix 8
AA8
A
283 285Right-handed 310
Helix 9
AA9
A
286 303Right-handed alpha
Helix 10
AB1
A
303 324Right-handed alpha
Helix 11
AB2
A
329 362Right-handed alpha
Helix 12
AB3
A
367 397Right-handed alpha
Helix 13
AB4
A
400 410Right-handed alpha
Helix 14
AB5
B
6 33Right-handed alpha
Helix 15
AB6
B
44 53Right-handed alpha
Helix 16
AB7
B
207 216Right-handed 310
Helix 17
AB8
B
228 230Right-handed 310
Helix 18
AB9
B
242 255Right-handed alpha
Helix 19
AC1
B
270 281Right-handed alpha
Helix 20
AC2
B
282 286Right-handed 310
Helix 21
AC3
B
295 309Right-handed alpha
Helix 22
AC4
B
329 351Right-handed alpha
Helix 23
AC5
C
4 26Right-handed alpha
Helix 24
AC6
C
29 34Right-handed alpha
Helix 25
AC7
D
8 24Right-handed alpha
Helix 26
AC8
D
29 44Right-handed alpha
Helix 27
AC9
E
56 59Right-handed 310
Helix 28
AD1
E
77 79Right-handed 310
Helix 29
AD2
E
90 94Right-handed 310
Helix 30
AD3
E
211 215Right-handed 310
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There are 15 sheets in PDB entry 8U1U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
121 122anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
62 65anti-parallel
Strand 3
A
71 73anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 273first strand
Strand 2
A
276 281anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 191first strand
Strand 2
B
194 200anti-parallel
Strand 3
B
34 39parallel
Strand 4
B
220 226parallel
Strand 5
B
264 269parallel
Strand 6
B
319 323parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 51first strand
Strand 2
C
336 339anti-parallel
Strand 3
C
327 330anti-parallel
Strand 4
C
317 320anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 63first strand
Strand 2
C
69 74anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
88 94anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
100 105first strand
Strand 2
C
111 116anti-parallel
Strand 3
C
121 125anti-parallel
Strand 4
C
134 139anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 151first strand
Strand 2
C
156 161anti-parallel
Strand 3
C
166 170anti-parallel
Strand 4
C
176 180anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
187 192first strand
Strand 2
C
198 203anti-parallel
Strand 3
C
207 212anti-parallel
Strand 4
C
218 223anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
229 234first strand
Strand 2
C
240 245anti-parallel
Strand 3
C
249 254anti-parallel
Strand 4
C
259 265anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 278first strand
Strand 2
C
284 289anti-parallel
Strand 3
C
294 298anti-parallel
Strand 4
C
304 308anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
6 10first strand
Strand 2
E
21 28anti-parallel
Strand 3
E
81 86anti-parallel
Strand 4
E
71 76anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
14 15first strand
Strand 2
E
118 122parallel
Strand 3
E
95 102anti-parallel
Strand 4
E
36 42anti-parallel
Strand 5
E
48 54anti-parallel
Strand 6
E
61 63anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
131 132first strand
Strand 2
E
146 152anti-parallel
Strand 3
E
202 207anti-parallel
Strand 4
E
194 199anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
138 139first strand
Strand 2
E
234 237parallel
Strand 3
E
216 222anti-parallel
Strand 4
E
165 170anti-parallel
Strand 5
E
177 181anti-parallel
Strand 6
E
185 186anti-parallel
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