Analysis of interatomic Contacts of Structural Units in PDB entry:
8U29

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U29 entry

There are 3 chains in PDB entry 8U29 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 18	GLN 1125
B	GLY 18	GLN 1125
C	GLY 18	GLN 1125

There are 78 helices in PDB entry 8U29. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	243	246	Right-handed 310
Helix 2	AA2	A	284	293	Right-handed alpha
Helix 3	AA3	A	328	333	Right-handed alpha
Helix 4	AA4	A	339	343	Right-handed 310
Helix 5	AA5	A	356	360	Right-handed 310
Helix 6	AA6	A	377	380	Right-handed 310
Helix 7	AA7	A	396	401	Right-handed 310
Helix 8	AA8	A	407	413	Right-handed alpha
Helix 9	AA9	A	429	434	Right-handed alpha
Helix 10	AB1	A	608	613	Right-handed alpha
Helix 11	AB2	A	622	627	Right-handed alpha
Helix 12	AB3	A	720	726	Right-handed alpha
Helix 13	AB4	A	729	737	Right-handed alpha
Helix 14	AB5	A	738	740	Right-handed 310
Helix 15	AB6	A	741	766	Right-handed alpha
Helix 16	AB7	A	799	807	Right-handed alpha
Helix 17	AB8	A	832	839	Right-handed alpha
Helix 18	AB9	A	849	866	Right-handed alpha
Helix 19	AC1	A	880	891	Right-handed alpha
Helix 20	AC2	A	896	902	Right-handed alpha
Helix 21	AC3	A	902	923	Right-handed alpha
Helix 22	AC4	A	924	927	Right-handed 310
Helix 23	AC5	A	928	947	Right-handed alpha
Helix 24	AC6	A	948	950	Right-handed 310
Helix 25	AC7	A	959	967	Right-handed alpha
Helix 26	AC8	A	968	1015	Right-handed alpha
Helix 27	AC9	B	243	246	Right-handed 310
Helix 28	AD1	B	284	293	Right-handed alpha
Helix 29	AD2	B	328	333	Right-handed alpha
Helix 30	AD3	B	339	343	Right-handed 310
Helix 31	AD4	B	356	360	Right-handed 310
Helix 32	AD5	B	377	380	Right-handed 310
Helix 33	AD6	B	396	401	Right-handed 310
Helix 34	AD7	B	407	413	Right-handed alpha
Helix 35	AD8	B	429	434	Right-handed alpha
Helix 36	AD9	B	608	613	Right-handed alpha
Helix 37	AE1	B	622	627	Right-handed alpha
Helix 38	AE2	B	720	726	Right-handed alpha
Helix 39	AE3	B	729	737	Right-handed alpha
Helix 40	AE4	B	738	740	Right-handed 310
Helix 41	AE5	B	741	766	Right-handed alpha
Helix 42	AE6	B	799	807	Right-handed alpha
Helix 43	AE7	B	832	839	Right-handed alpha
Helix 44	AE8	B	849	866	Right-handed alpha
Helix 45	AE9	B	880	891	Right-handed alpha
Helix 46	AF1	B	896	902	Right-handed alpha
Helix 47	AF2	B	902	923	Right-handed alpha
Helix 48	AF3	B	924	927	Right-handed 310
Helix 49	AF4	B	928	947	Right-handed alpha
Helix 50	AF5	B	948	950	Right-handed 310
Helix 51	AF6	B	959	967	Right-handed alpha
Helix 52	AF7	B	968	1015	Right-handed alpha
Helix 53	AF8	C	243	246	Right-handed 310
Helix 54	AF9	C	284	293	Right-handed alpha
Helix 55	AG1	C	328	333	Right-handed alpha
Helix 56	AG2	C	339	343	Right-handed 310
Helix 57	AG3	C	356	360	Right-handed 310
Helix 58	AG4	C	377	380	Right-handed 310
Helix 59	AG5	C	396	401	Right-handed 310
Helix 60	AG6	C	407	413	Right-handed alpha
Helix 61	AG7	C	429	434	Right-handed alpha
Helix 62	AG8	C	608	613	Right-handed alpha
Helix 63	AG9	C	622	627	Right-handed alpha
Helix 64	AH1	C	720	726	Right-handed alpha
Helix 65	AH2	C	729	737	Right-handed alpha
Helix 66	AH3	C	738	740	Right-handed 310
Helix 67	AH4	C	741	766	Right-handed alpha
Helix 68	AH5	C	799	807	Right-handed alpha
Helix 69	AH6	C	832	839	Right-handed alpha
Helix 70	AH7	C	849	866	Right-handed alpha
Helix 71	AH8	C	880	891	Right-handed alpha
Helix 72	AH9	C	896	902	Right-handed alpha
Helix 73	AI1	C	902	923	Right-handed alpha
Helix 74	AI2	C	924	927	Right-handed 310
Helix 75	AI3	C	928	947	Right-handed alpha
Helix 76	AI4	C	948	950	Right-handed 310
Helix 77	AI5	C	959	967	Right-handed alpha
Helix 78	AI6	C	968	1015	Right-handed alpha

There are 54 sheets in PDB entry 8U29. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	65	72	anti-parallel
Strand 3	A	253	259	anti-parallel
Strand 4	A	93	99	anti-parallel
Strand 5	A	182	193	anti-parallel
Strand 6	A	196	208	anti-parallel
Strand 7	A	216	226	anti-parallel
Strand 8	A	37	41	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	32	34	first strand
Strand 2	A	65	72	anti-parallel
Strand 3	A	81	82	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	59	first strand
Strand 2	A	261	269	anti-parallel
Strand 3	A	275	280	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	233	241	anti-parallel
Strand 3	A	136	147	parallel
Strand 4	A	150	160	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	233	241	anti-parallel
Strand 3	A	104	110	anti-parallel
Strand 4	A	119	124	anti-parallel
Strand 5	A	128	134	anti-parallel
Strand 6	A	165	170	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	304	first strand
Strand 2	A	584	588	anti-parallel
Strand 3	A	598	602	anti-parallel
Strand 4	A	639	642	anti-parallel
Strand 5	A	633	635	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	318	first strand
Strand 2	A	527	532	parallel
Strand 3	A	535	543	anti-parallel
Strand 4	A	573	577	anti-parallel
Strand 5	A	562	566	anti-parallel
Strand 6	A	554	556	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	348	first strand
Strand 2	A	385	394	anti-parallel
Strand 3	A	496	505	anti-parallel
Strand 4	A	422	428	anti-parallel
Strand 5	A	367	370	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	352	first strand
Strand 2	A	513	514	parallel
Strand 3	A	382	383	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	443	first strand
Strand 2	A	481	483	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	462	463	first strand
Strand 2	A	477	478	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	651	first strand
Strand 2	A	676	680	parallel
Strand 3	A	661	664	anti-parallel
Strand 4	A	655	656	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	685	686	first strand
Strand 2	B	771	772	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	711	first strand
Strand 2	A	1042	1061	anti-parallel
Strand 3	A	1030	1039	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	711	first strand
Strand 2	A	1042	1061	anti-parallel
Strand 3	A	1077	1080	anti-parallel
Strand 4	A	1085	1088	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	719	first strand
Strand 2	A	841	844	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	771	772	first strand
Strand 2	C	685	686	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	867	868	first strand
Strand 2	A	877	878	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1103	1105	first strand
Strand 2	A	1070	1073	anti-parallel
Strand 3	A	1064	1065	anti-parallel
Strand 4	A	1116	1117	parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	65	72	anti-parallel
Strand 3	B	253	259	anti-parallel
Strand 4	B	93	99	anti-parallel
Strand 5	B	182	193	anti-parallel
Strand 6	B	196	208	anti-parallel
Strand 7	B	216	226	anti-parallel
Strand 8	B	37	41	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	34	first strand
Strand 2	B	65	72	anti-parallel
Strand 3	B	81	82	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	59	first strand
Strand 2	B	261	269	anti-parallel
Strand 3	B	275	280	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	233	241	anti-parallel
Strand 3	B	136	147	parallel
Strand 4	B	150	160	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	233	241	anti-parallel
Strand 3	B	104	110	anti-parallel
Strand 4	B	119	124	anti-parallel
Strand 5	B	128	134	anti-parallel
Strand 6	B	165	170	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	304	first strand
Strand 2	B	584	588	anti-parallel
Strand 3	B	598	602	anti-parallel
Strand 4	B	639	642	anti-parallel
Strand 5	B	633	635	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	315	318	first strand
Strand 2	B	527	532	parallel
Strand 3	B	535	543	anti-parallel
Strand 4	B	573	577	anti-parallel
Strand 5	B	562	566	anti-parallel
Strand 6	B	554	556	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	348	first strand
Strand 2	B	385	394	anti-parallel
Strand 3	B	496	505	anti-parallel
Strand 4	B	422	428	anti-parallel
Strand 5	B	367	370	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	351	352	first strand
Strand 2	B	513	514	parallel
Strand 3	B	382	383	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	443	first strand
Strand 2	B	481	483	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	462	463	first strand
Strand 2	B	477	478	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	645	651	first strand
Strand 2	B	676	680	parallel
Strand 3	B	661	664	anti-parallel
Strand 4	B	655	656	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	685	686	first strand
Strand 2	C	771	772	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	694	711	first strand
Strand 2	B	1042	1061	anti-parallel
Strand 3	B	1030	1039	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	694	711	first strand
Strand 2	B	1042	1061	anti-parallel
Strand 3	B	1077	1080	anti-parallel
Strand 4	B	1085	1088	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	719	first strand
Strand 2	B	841	844	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	867	868	first strand
Strand 2	B	877	878	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1103	1105	first strand
Strand 2	B	1070	1073	anti-parallel
Strand 3	B	1064	1065	anti-parallel
Strand 4	B	1116	1117	parallel

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There are 8 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	65	72	anti-parallel
Strand 3	C	253	259	anti-parallel
Strand 4	C	93	99	anti-parallel
Strand 5	C	182	193	anti-parallel
Strand 6	C	196	208	anti-parallel
Strand 7	C	216	226	anti-parallel
Strand 8	C	37	41	parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	34	first strand
Strand 2	C	65	72	anti-parallel
Strand 3	C	81	82	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	59	first strand
Strand 2	C	261	269	anti-parallel
Strand 3	C	275	280	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	233	241	anti-parallel
Strand 3	C	136	147	parallel
Strand 4	C	150	160	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	233	241	anti-parallel
Strand 3	C	104	110	anti-parallel
Strand 4	C	119	124	anti-parallel
Strand 5	C	128	134	anti-parallel
Strand 6	C	165	170	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	304	first strand
Strand 2	C	584	588	anti-parallel
Strand 3	C	598	602	anti-parallel
Strand 4	C	639	642	anti-parallel
Strand 5	C	633	635	anti-parallel

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There are 6 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	315	318	first strand
Strand 2	C	527	532	parallel
Strand 3	C	535	543	anti-parallel
Strand 4	C	573	577	anti-parallel
Strand 5	C	562	566	anti-parallel
Strand 6	C	554	556	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	348	first strand
Strand 2	C	385	394	anti-parallel
Strand 3	C	496	505	anti-parallel
Strand 4	C	422	428	anti-parallel
Strand 5	C	367	370	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	351	352	first strand
Strand 2	C	513	514	parallel
Strand 3	C	382	383	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	441	443	first strand
Strand 2	C	481	483	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	462	463	first strand
Strand 2	C	477	478	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	645	651	first strand
Strand 2	C	676	680	parallel
Strand 3	C	661	664	anti-parallel
Strand 4	C	655	656	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	711	first strand
Strand 2	C	1042	1061	anti-parallel
Strand 3	C	1030	1039	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	711	first strand
Strand 2	C	1042	1061	anti-parallel
Strand 3	C	1077	1080	anti-parallel
Strand 4	C	1085	1088	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	719	first strand
Strand 2	C	841	844	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	867	868	first strand
Strand 2	C	877	878	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1103	1105	first strand
Strand 2	C	1070	1073	anti-parallel
Strand 3	C	1064	1065	anti-parallel
Strand 4	C	1116	1117	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U29

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U29