Analysis of interatomic Contacts of Structural Units in PDB entry:
8U2C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U2C entry

There are 10 chains in PDB entry 8U2C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 35	TYR 654
B	ALA 35	TYR 654
C	ASP 1	ARG 107
D	VAL 2	SER 119
E	ASP 1	ARG 107
F	VAL 2	SER 119
I	SER 119	PRO 220
K	LYS 129	PHE 231
J	SER 119	PRO 220
L	LYS 129	PHE 231

There are 65 helices in PDB entry 8U2C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	85	94	Right-handed alpha
Helix 2	AA2	A	116	121	Right-handed alpha
Helix 3	AA3	A	135	148	Right-handed alpha
Helix 4	AA4	A	153	168	Right-handed alpha
Helix 5	AA5	A	170	174	Right-handed 310
Helix 6	AA6	A	187	201	Right-handed alpha
Helix 7	AA7	A	217	233	Right-handed alpha
Helix 8	AA8	A	246	251	Right-handed alpha
Helix 9	AA9	A	271	281	Right-handed alpha
Helix 10	AB1	A	289	299	Right-handed alpha
Helix 11	AB2	A	329	339	Right-handed alpha
Helix 12	AB3	A	339	353	Right-handed alpha
Helix 13	AB4	A	372	390	Right-handed alpha
Helix 14	AB5	A	395	413	Right-handed alpha
Helix 15	AB6	A	421	441	Right-handed alpha
Helix 16	AB7	A	442	444	Right-handed 310
Helix 17	AB8	A	445	450	Right-handed alpha
Helix 18	AB9	A	451	461	Right-handed alpha
Helix 19	AC1	A	465	477	Right-handed alpha
Helix 20	AC2	A	479	498	Right-handed alpha
Helix 21	AC3	A	502	529	Right-handed alpha
Helix 22	AC4	A	533	551	Right-handed alpha
Helix 23	AC5	A	557	561	Right-handed 310
Helix 24	AC6	A	562	567	Right-handed alpha
Helix 25	AC7	A	568	571	Right-handed 310
Helix 26	AC8	A	572	587	Right-handed alpha
Helix 27	AC9	A	609	617	Right-handed alpha
Helix 28	AD1	A	622	650	Right-handed alpha
Helix 29	AD2	B	85	94	Right-handed alpha
Helix 30	AD3	B	116	121	Right-handed alpha
Helix 31	AD4	B	135	148	Right-handed alpha
Helix 32	AD5	B	153	168	Right-handed alpha
Helix 33	AD6	B	170	174	Right-handed 310
Helix 34	AD7	B	187	201	Right-handed alpha
Helix 35	AD8	B	217	233	Right-handed alpha
Helix 36	AD9	B	246	251	Right-handed alpha
Helix 37	AE1	B	271	281	Right-handed alpha
Helix 38	AE2	B	289	299	Right-handed alpha
Helix 39	AE3	B	329	339	Right-handed alpha
Helix 40	AE4	B	339	352	Right-handed alpha
Helix 41	AE5	B	372	390	Right-handed alpha
Helix 42	AE6	B	395	413	Right-handed alpha
Helix 43	AE7	B	421	441	Right-handed alpha
Helix 44	AE8	B	442	444	Right-handed 310
Helix 45	AE9	B	445	450	Right-handed alpha
Helix 46	AF1	B	451	461	Right-handed alpha
Helix 47	AF2	B	465	477	Right-handed alpha
Helix 48	AF3	B	479	498	Right-handed alpha
Helix 49	AF4	B	502	529	Right-handed alpha
Helix 50	AF5	B	533	551	Right-handed alpha
Helix 51	AF6	B	557	561	Right-handed 310
Helix 52	AF7	B	562	567	Right-handed alpha
Helix 53	AF8	B	568	571	Right-handed 310
Helix 54	AF9	B	572	587	Right-handed alpha
Helix 55	AG1	B	609	617	Right-handed alpha
Helix 56	AG2	B	622	650	Right-handed alpha
Helix 57	AG3	C	79	83	Right-handed 310
Helix 58	AG4	D	62	65	Right-handed 310
Helix 59	AG5	E	79	83	Right-handed 310
Helix 60	AG6	F	62	65	Right-handed 310
Helix 61	AG7	F	87	91	Right-handed 310
Helix 62	AG8	I	163	165	Right-handed 310
Helix 63	AG9	K	145	149	Right-handed 310
Helix 64	AH1	J	163	165	Right-handed 310
Helix 65	AH2	L	145	149	Right-handed 310

There are 25 sheets in PDB entry 8U2C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	71	first strand
Strand 2	A	37	44	anti-parallel
Strand 3	A	105	108	anti-parallel
Strand 4	A	111	112	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	206	209	parallel
Strand 3	A	237	241	parallel
Strand 4	A	74	79	parallel
Strand 5	A	255	260	parallel
Strand 6	A	263	268	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	71	first strand
Strand 2	B	37	44	anti-parallel
Strand 3	B	105	108	anti-parallel
Strand 4	B	111	112	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	124	first strand
Strand 2	B	206	209	parallel
Strand 3	B	237	241	parallel
Strand 4	B	74	79	parallel
Strand 5	B	255	260	parallel
Strand 6	B	263	268	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	6	first strand
Strand 2	C	19	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	62	64	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	45	49	anti-parallel
Strand 3	C	33	38	anti-parallel
Strand 4	C	84	90	anti-parallel
Strand 5	C	97	98	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	45	49	anti-parallel
Strand 3	C	33	38	anti-parallel
Strand 4	C	84	90	anti-parallel
Strand 5	C	102	104	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	17	25	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	116	117	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	46	53	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	93	99	anti-parallel
Strand 5	D	106	109	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	60	first strand
Strand 2	D	46	53	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	93	99	anti-parallel
Strand 5	D	113	114	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	64	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	49	first strand
Strand 2	E	33	38	anti-parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	49	first strand
Strand 2	E	33	38	anti-parallel
Strand 3	E	85	90	anti-parallel
Strand 4	E	102	103	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	78	84	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	113	117	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	34	40	anti-parallel
Strand 5	F	46	53	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	113	117	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	106	109	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	128	131	first strand
Strand 2	I	144	152	anti-parallel
Strand 3	I	183	190	anti-parallel
Strand 4	I	170	177	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	159	161	first strand
Strand 2	I	202	206	anti-parallel
Strand 3	I	213	217	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	136	140	first strand
Strand 2	K	151	161	anti-parallel
Strand 3	K	195	204	anti-parallel
Strand 4	K	181	185	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	167	170	first strand
Strand 2	K	216	219	anti-parallel
Strand 3	K	227	229	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	128	131	first strand
Strand 2	J	144	152	anti-parallel
Strand 3	J	183	190	anti-parallel
Strand 4	J	170	177	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	159	161	first strand
Strand 2	J	202	206	anti-parallel
Strand 3	J	213	217	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	136	140	first strand
Strand 2	L	151	161	anti-parallel
Strand 3	L	195	204	anti-parallel
Strand 4	L	181	186	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	168	170	first strand
Strand 2	L	216	218	anti-parallel
Strand 3	L	227	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U2C

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U2C