Analysis of interatomic Contacts of Structural Units in PDB entry:
8U2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U2M entry

There are 2 chains in PDB entry 8U2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 14ARG 393
B
 PRO 12GLN 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8U2M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 24Right-handed alpha
Helix 2
AA2
A
25 36Right-handed alpha
Helix 3
AA3
A
51 61Right-handed alpha
Helix 4
AA4
A
68 73Right-handed 310
Helix 5
AA5
A
77 81Right-handed 310
Helix 6
AA6
A
82 86Right-handed 310
Helix 7
AA7
A
89 104Right-handed alpha
Helix 8
AA8
A
106 126Right-handed alpha
Helix 9
AA9
A
134 138Right-handed alpha
Helix 10
AB1
A
138 152Right-handed alpha
Helix 11
AB2
A
157 172Right-handed alpha
Helix 12
AB3
A
177 179Right-handed 310
Helix 13
AB4
A
180 202Right-handed alpha
Helix 14
AB5
A
206 219Right-handed alpha
Helix 15
AB6
A
221 254Right-handed alpha
Helix 16
AB7
A
255 259Right-handed 310
Helix 17
AB8
A
263 279Right-handed alpha
Helix 18
AB9
A
308 313Right-handed alpha
Helix 19
AC1
A
346 365Right-handed alpha
Helix 20
AC2
B
18 24Right-handed alpha
Helix 21
AC3
B
25 36Right-handed alpha
Helix 22
AC4
B
51 61Right-handed alpha
Helix 23
AC5
B
68 73Right-handed 310
Helix 24
AC6
B
77 81Right-handed 310
Helix 25
AC7
B
82 86Right-handed 310
Helix 26
AC8
B
91 104Right-handed alpha
Helix 27
AC9
B
106 124Right-handed alpha
Helix 28
AD1
B
134 138Right-handed alpha
Helix 29
AD2
B
138 152Right-handed alpha
Helix 30
AD3
B
157 172Right-handed alpha
Helix 31
AD4
B
177 179Right-handed 310
Helix 32
AD5
B
180 202Right-handed alpha
Helix 33
AD6
B
206 217Right-handed alpha
Helix 34
AD7
B
221 254Right-handed alpha
Helix 35
AD8
B
255 259Right-handed 310
Helix 36
AD9
B
263 279Right-handed alpha
Helix 37
AE1
B
308 313Right-handed alpha
Helix 38
AE2
B
346 365Right-handed alpha
Helix 39
AE3
C
18 24Right-handed alpha
Helix 40
AE4
C
25 36Right-handed alpha
Helix 41
AE5
C
51 61Right-handed alpha
Helix 42
AE6
C
68 73Right-handed 310
Helix 43
AE7
C
77 81Right-handed 310
Helix 44
AE8
C
82 86Right-handed 310
Helix 45
AE9
C
91 104Right-handed alpha
Helix 46
AF1
C
106 126Right-handed alpha
Helix 47
AF2
C
134 138Right-handed alpha
Helix 48
AF3
C
138 152Right-handed alpha
Helix 49
AF4
C
157 172Right-handed alpha
Helix 50
AF5
C
177 179Right-handed 310
Helix 51
AF6
C
180 202Right-handed alpha
Helix 52
AF7
C
206 219Right-handed alpha
Helix 53
AF8
C
221 254Right-handed alpha
Helix 54
AF9
C
255 260Right-handed 310
Helix 55
AG1
C
263 279Right-handed alpha
Helix 56
AG2
C
308 313Right-handed alpha
Helix 57
AG3
C
346 365Right-handed alpha
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There are 12 sheets in PDB entry 8U2M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
46 49anti-parallel
Strand 3
A
304 307parallel
Strand 4
A
284 288anti-parallel
Strand 5
A
65 66anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 133first strand
Strand 2
A
389 393anti-parallel
Strand 3
A
367 370anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 294first strand
Strand 2
A
297 299anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
375 376first strand
Strand 2
A
385 387anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
46 49anti-parallel
Strand 3
B
304 307parallel
Strand 4
B
284 288anti-parallel
Strand 5
B
65 66anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 133first strand
Strand 2
B
389 393anti-parallel
Strand 3
B
367 370anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 294first strand
Strand 2
B
297 299anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 376first strand
Strand 2
B
385 387anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
38 41first strand
Strand 2
C
46 49anti-parallel
Strand 3
C
304 307parallel
Strand 4
C
284 288anti-parallel
Strand 5
C
65 66anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
131 133first strand
Strand 2
C
389 391anti-parallel
Strand 3
C
369 370anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
292 294first strand
Strand 2
C
297 299anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
375 376first strand
Strand 2
C
385 387anti-parallel
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