Analysis of interatomic Contacts of Structural Units in PDB entry:
8U2P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U2P entry

There is 1 chain in PDB entry 8U2P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 3SER 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8U2P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 15Right-handed alpha
Helix 2
AA2
A
22 26Right-handed 310
Helix 3
AA3
A
35 54Right-handed alpha
Helix 4
AA4
A
71 77Right-handed alpha
Helix 5
AA5
A
78 83Right-handed alpha
Helix 6
AA6
A
164 170Right-handed alpha
Helix 7
AA7
A
171 180Right-handed alpha
Helix 8
AA8
A
220 222Right-handed 310
Helix 9
AA9
A
223 242Right-handed alpha
Helix 10
AB1
A
245 247Right-handed 310
Helix 11
AB2
A
255 259Right-handed 310
Helix 12
AB3
A
291 302Right-handed alpha
Helix 13
AB4
A
327 338Right-handed alpha
Helix 14
AB5
A
378 391Right-handed alpha
Helix 15
AB6
A
403 413Right-handed alpha
Helix 16
AB7
A
425 430Right-handed alpha
Helix 17
AB8
A
449 458Right-handed alpha
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There are 7 sheets in PDB entry 8U2P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
32 34anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 62first strand
Strand 2
A
185 194parallel
Strand 3
A
209 219anti-parallel
Strand 4
A
319 326anti-parallel
Strand 5
A
280 290anti-parallel
Strand 6
A
265 272anti-parallel
Strand 7
A
249 253anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 86first strand
Strand 2
A
139 141anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
157 159anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 309first strand
Strand 2
A
314 316anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 342first strand
Strand 2
A
354 357anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 398first strand
Strand 2
A
368 372parallel
Strand 3
A
418 422parallel
Strand 4
A
431 436anti-parallel
Strand 5
A
442 446anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il