Analysis of interatomic Contacts of Structural Units in PDB entry:
8U2S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U2S entry

There are 2 chains in PDB entry 8U2S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 41	CYS 702
B	ASN 42	GLN 675

There are 54 helices in PDB entry 8U2S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	54	Right-handed alpha
Helix 2	AA2	A	59	73	Right-handed alpha
Helix 3	AA3	A	73	86	Right-handed alpha
Helix 4	AA4	A	94	97	Right-handed 310
Helix 5	AA5	A	104	108	Right-handed 310
Helix 6	AA6	A	121	127	Right-handed alpha
Helix 7	AA7	A	128	131	Right-handed 310
Helix 8	AA8	A	155	174	Right-handed alpha
Helix 9	AA9	A	188	202	Right-handed alpha
Helix 10	AB1	A	213	225	Right-handed alpha
Helix 11	AB2	A	243	258	Right-handed alpha
Helix 12	AB3	A	285	292	Right-handed alpha
Helix 13	AB4	A	293	299	Right-handed alpha
Helix 14	AB5	A	330	346	Right-handed alpha
Helix 15	AB6	A	361	368	Right-handed alpha
Helix 16	AB7	A	369	375	Right-handed alpha
Helix 17	AB8	A	392	401	Right-handed alpha
Helix 18	AB9	A	409	420	Right-handed alpha
Helix 19	AC1	A	421	426	Right-handed alpha
Helix 20	AC2	A	443	453	Right-handed alpha
Helix 21	AC3	A	467	471	Right-handed 310
Helix 22	AC4	A	533	542	Right-handed alpha
Helix 23	AC5	A	581	590	Right-handed alpha
Helix 24	AC6	A	624	639	Right-handed alpha
Helix 25	AC7	A	640	644	Right-handed 310
Helix 26	AC8	A	664	673	Right-handed alpha
Helix 27	AC9	A	689	702	Right-handed alpha
Helix 28	AD1	B	47	54	Right-handed alpha
Helix 29	AD2	B	59	73	Right-handed alpha
Helix 30	AD3	B	73	86	Right-handed alpha
Helix 31	AD4	B	94	97	Right-handed 310
Helix 32	AD5	B	104	108	Right-handed 310
Helix 33	AD6	B	121	127	Right-handed alpha
Helix 34	AD7	B	128	131	Right-handed 310
Helix 35	AD8	B	155	174	Right-handed alpha
Helix 36	AD9	B	188	202	Right-handed alpha
Helix 37	AE1	B	213	225	Right-handed alpha
Helix 38	AE2	B	243	258	Right-handed alpha
Helix 39	AE3	B	285	292	Right-handed alpha
Helix 40	AE4	B	293	298	Right-handed 310
Helix 41	AE5	B	330	346	Right-handed alpha
Helix 42	AE6	B	361	368	Right-handed alpha
Helix 43	AE7	B	369	375	Right-handed alpha
Helix 44	AE8	B	392	401	Right-handed alpha
Helix 45	AE9	B	409	420	Right-handed alpha
Helix 46	AF1	B	421	426	Right-handed alpha
Helix 47	AF2	B	443	453	Right-handed alpha
Helix 48	AF3	B	467	471	Right-handed 310
Helix 49	AF4	B	533	542	Right-handed alpha
Helix 50	AF5	B	581	590	Right-handed alpha
Helix 51	AF6	B	624	639	Right-handed alpha
Helix 52	AF7	B	640	644	Right-handed 310
Helix 53	AF8	B	664	673	Right-handed alpha
Helix 54	AF9	B	689	702	Right-handed alpha

There are 16 sheets in PDB entry 8U2S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	102	first strand
Strand 2	A	111	114	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	305	306	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	138	143	anti-parallel
Strand 3	A	378	382	parallel
Strand 4	A	352	355	parallel
Strand 5	A	405	408	parallel
Strand 6	A	434	437	parallel
Strand 7	A	460	463	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	263	267	parallel
Strand 3	A	228	232	parallel
Strand 4	A	180	184	parallel
Strand 5	A	204	207	parallel
Strand 6	A	310	316	parallel
Strand 7	A	324	329	anti-parallel
Strand 8	A	529	530	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	237	first strand
Strand 2	A	240	242	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	498	501	first strand
Strand 2	A	513	519	anti-parallel
Strand 3	A	548	556	anti-parallel
Strand 4	A	562	567	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	574	first strand
Strand 2	A	577	580	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	594	603	first strand
Strand 2	A	609	617	anti-parallel
Strand 3	A	647	650	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	102	first strand
Strand 2	B	111	114	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	120	first strand
Strand 2	B	305	306	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	138	143	anti-parallel
Strand 3	B	378	382	parallel
Strand 4	B	352	355	parallel
Strand 5	B	405	408	parallel
Strand 6	B	434	437	parallel
Strand 7	B	460	463	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	263	267	parallel
Strand 3	B	228	232	parallel
Strand 4	B	180	184	parallel
Strand 5	B	204	207	parallel
Strand 6	B	310	316	parallel
Strand 7	B	324	329	anti-parallel
Strand 8	B	529	530	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	237	first strand
Strand 2	B	240	242	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	498	501	first strand
Strand 2	B	513	519	anti-parallel
Strand 3	B	548	556	anti-parallel
Strand 4	B	562	567	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	571	574	first strand
Strand 2	B	577	580	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	594	603	first strand
Strand 2	B	609	617	anti-parallel
Strand 3	B	647	650	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U2S

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U2S