Analysis of interatomic Contacts of Structural Units in PDB entry:
8U39

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U39 entry

There are 7 chains in PDB entry 8U39 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	ALA 1	PRO 524
A	ALA 1	PRO 524
B	ALA 1	PRO 524
C	ALA 1	PRO 524
D	ALA 1	PRO 524
E	ALA 1	PRO 524
F	ALA 1	PRO 524

There are154 helices in PDB entry 8U39. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	7	27	Right-handed alpha
Helix 2	AA2	G	50	57	Right-handed alpha
Helix 3	AA3	G	62	78	Right-handed alpha
Helix 4	AA4	G	87	107	Right-handed alpha
Helix 5	AA5	G	110	133	Right-handed alpha
Helix 6	AA6	G	138	150	Right-handed alpha
Helix 7	AA7	G	153	168	Right-handed alpha
Helix 8	AA8	G	199	203	Right-handed 310
Helix 9	AA9	G	206	210	Right-handed 310
Helix 10	AB1	G	227	241	Right-handed alpha
Helix 11	AB2	G	253	268	Right-handed alpha
Helix 12	AB3	G	280	295	Right-handed alpha
Helix 13	AB4	G	312	316	Right-handed 310
Helix 14	AB5	G	339	354	Right-handed alpha
Helix 15	AB6	G	357	373	Right-handed alpha
Helix 16	AB7	G	384	408	Right-handed alpha
Helix 17	AB8	G	415	420	Right-handed alpha
Helix 18	AB9	G	421	426	Right-handed 310
Helix 19	AC1	G	432	446	Right-handed alpha
Helix 20	AC2	G	447	458	Right-handed alpha
Helix 21	AC3	G	461	471	Right-handed alpha
Helix 22	AC4	G	496	516	Right-handed alpha
Helix 23	AC5	A	7	27	Right-handed alpha
Helix 24	AC6	A	50	57	Right-handed alpha
Helix 25	AC7	A	62	78	Right-handed alpha
Helix 26	AC8	A	87	107	Right-handed alpha
Helix 27	AC9	A	110	133	Right-handed alpha
Helix 28	AD1	A	138	150	Right-handed alpha
Helix 29	AD2	A	153	168	Right-handed alpha
Helix 30	AD3	A	199	203	Right-handed 310
Helix 31	AD4	A	206	210	Right-handed 310
Helix 32	AD5	A	227	241	Right-handed alpha
Helix 33	AD6	A	253	268	Right-handed alpha
Helix 34	AD7	A	280	295	Right-handed alpha
Helix 35	AD8	A	312	316	Right-handed 310
Helix 36	AD9	A	339	354	Right-handed alpha
Helix 37	AE1	A	357	373	Right-handed alpha
Helix 38	AE2	A	384	408	Right-handed alpha
Helix 39	AE3	A	415	420	Right-handed alpha
Helix 40	AE4	A	421	426	Right-handed 310
Helix 41	AE5	A	432	446	Right-handed alpha
Helix 42	AE6	A	447	458	Right-handed alpha
Helix 43	AE7	A	461	471	Right-handed alpha
Helix 44	AE8	A	496	516	Right-handed alpha
Helix 45	AE9	B	7	27	Right-handed alpha
Helix 46	AF1	B	50	57	Right-handed alpha
Helix 47	AF2	B	62	78	Right-handed alpha
Helix 48	AF3	B	87	107	Right-handed alpha
Helix 49	AF4	B	110	133	Right-handed alpha
Helix 50	AF5	B	138	150	Right-handed alpha
Helix 51	AF6	B	153	168	Right-handed alpha
Helix 52	AF7	B	199	203	Right-handed 310
Helix 53	AF8	B	206	210	Right-handed 310
Helix 54	AF9	B	227	241	Right-handed alpha
Helix 55	AG1	B	253	268	Right-handed alpha
Helix 56	AG2	B	280	295	Right-handed alpha
Helix 57	AG3	B	312	316	Right-handed 310
Helix 58	AG4	B	339	354	Right-handed alpha
Helix 59	AG5	B	357	373	Right-handed alpha
Helix 60	AG6	B	384	408	Right-handed alpha
Helix 61	AG7	B	415	420	Right-handed alpha
Helix 62	AG8	B	421	426	Right-handed 310
Helix 63	AG9	B	432	446	Right-handed alpha
Helix 64	AH1	B	447	458	Right-handed alpha
Helix 65	AH2	B	461	471	Right-handed alpha
Helix 66	AH3	B	496	516	Right-handed alpha
Helix 67	AH4	C	7	27	Right-handed alpha
Helix 68	AH5	C	50	57	Right-handed alpha
Helix 69	AH6	C	62	78	Right-handed alpha
Helix 70	AH7	C	87	107	Right-handed alpha
Helix 71	AH8	C	110	133	Right-handed alpha
Helix 72	AH9	C	138	150	Right-handed alpha
Helix 73	AI1	C	153	168	Right-handed alpha
Helix 74	AI2	C	199	203	Right-handed 310
Helix 75	AI3	C	206	210	Right-handed 310
Helix 76	AI4	C	227	241	Right-handed alpha
Helix 77	AI5	C	253	268	Right-handed alpha
Helix 78	AI6	C	280	295	Right-handed alpha
Helix 79	AI7	C	312	316	Right-handed 310
Helix 80	AI8	C	339	354	Right-handed alpha
Helix 81	AI9	C	357	373	Right-handed alpha
Helix 82	AJ1	C	384	408	Right-handed alpha
Helix 83	AJ2	C	415	420	Right-handed alpha
Helix 84	AJ3	C	421	426	Right-handed 310
Helix 85	AJ4	C	432	446	Right-handed alpha
Helix 86	AJ5	C	447	458	Right-handed alpha
Helix 87	AJ6	C	461	471	Right-handed alpha
Helix 88	AJ7	C	496	516	Right-handed alpha
Helix 89	AJ8	D	7	27	Right-handed alpha
Helix 90	AJ9	D	50	57	Right-handed alpha
Helix 91	AK1	D	62	78	Right-handed alpha
Helix 92	AK2	D	87	107	Right-handed alpha
Helix 93	AK3	D	110	133	Right-handed alpha
Helix 94	AK4	D	138	150	Right-handed alpha
Helix 95	AK5	D	153	168	Right-handed alpha
Helix 96	AK6	D	199	203	Right-handed 310
Helix 97	AK7	D	206	210	Right-handed 310
Helix 98	AK8	D	227	241	Right-handed alpha
Helix 99	AK9	D	253	268	Right-handed alpha
Helix 100	AL1	D	280	295	Right-handed alpha
Helix 101	AL2	D	312	316	Right-handed 310
Helix 102	AL3	D	339	354	Right-handed alpha
Helix 103	AL4	D	357	373	Right-handed alpha
Helix 104	AL5	D	384	408	Right-handed alpha
Helix 105	AL6	D	415	420	Right-handed alpha
Helix 106	AL7	D	421	426	Right-handed 310
Helix 107	AL8	D	432	446	Right-handed alpha
Helix 108	AL9	D	447	458	Right-handed alpha
Helix 109	AM1	D	461	471	Right-handed alpha
Helix 110	AM2	D	496	516	Right-handed alpha
Helix 111	AM3	E	7	27	Right-handed alpha
Helix 112	AM4	E	50	57	Right-handed alpha
Helix 113	AM5	E	62	78	Right-handed alpha
Helix 114	AM6	E	87	107	Right-handed alpha
Helix 115	AM7	E	110	133	Right-handed alpha
Helix 116	AM8	E	138	150	Right-handed alpha
Helix 117	AM9	E	153	168	Right-handed alpha
Helix 118	AN1	E	199	203	Right-handed 310
Helix 119	AN2	E	206	210	Right-handed 310
Helix 120	AN3	E	227	241	Right-handed alpha
Helix 121	AN4	E	253	268	Right-handed alpha
Helix 122	AN5	E	280	295	Right-handed alpha
Helix 123	AN6	E	312	316	Right-handed 310
Helix 124	AN7	E	339	354	Right-handed alpha
Helix 125	AN8	E	357	373	Right-handed alpha
Helix 126	AN9	E	384	408	Right-handed alpha
Helix 127	AO1	E	415	420	Right-handed alpha
Helix 128	AO2	E	421	426	Right-handed 310
Helix 129	AO3	E	432	446	Right-handed alpha
Helix 130	AO4	E	447	458	Right-handed alpha
Helix 131	AO5	E	461	471	Right-handed alpha
Helix 132	AO6	E	496	516	Right-handed alpha
Helix 133	AO7	F	7	27	Right-handed alpha
Helix 134	AO8	F	50	57	Right-handed alpha
Helix 135	AO9	F	62	78	Right-handed alpha
Helix 136	AP1	F	87	107	Right-handed alpha
Helix 137	AP2	F	110	133	Right-handed alpha
Helix 138	AP3	F	138	150	Right-handed alpha
Helix 139	AP4	F	153	168	Right-handed alpha
Helix 140	AP5	F	199	203	Right-handed 310
Helix 141	AP6	F	206	210	Right-handed 310
Helix 142	AP7	F	227	241	Right-handed alpha
Helix 143	AP8	F	253	268	Right-handed alpha
Helix 144	AP9	F	280	295	Right-handed alpha
Helix 145	AQ1	F	312	316	Right-handed 310
Helix 146	AQ2	F	339	354	Right-handed alpha
Helix 147	AQ3	F	357	373	Right-handed alpha
Helix 148	AQ4	F	384	408	Right-handed alpha
Helix 149	AQ5	F	415	420	Right-handed alpha
Helix 150	AQ6	F	421	426	Right-handed 310
Helix 151	AQ7	F	432	446	Right-handed alpha
Helix 152	AQ8	F	447	458	Right-handed alpha
Helix 153	AQ9	F	461	471	Right-handed alpha
Helix 154	AR1	F	496	516	Right-handed alpha

There are 28 sheets in PDB entry 8U39. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	518	521	anti-parallel
Strand 3	A	36	38	parallel
Strand 4	A	46	48	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	48	first strand
Strand 2	G	36	38	anti-parallel
Strand 3	F	518	521	parallel
Strand 4	F	3	6	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	173	177	first strand
Strand 2	G	375	380	parallel
Strand 3	G	184	188	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	191	193	first strand
Strand 2	G	329	331	anti-parallel
Strand 3	G	317	324	anti-parallel
Strand 4	G	211	220	anti-parallel
Strand 5	G	245	249	parallel
Strand 6	G	272	275	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	410	412	first strand
Strand 2	G	493	495	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	518	521	anti-parallel
Strand 3	B	36	38	parallel
Strand 4	B	46	48	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	177	first strand
Strand 2	A	375	380	parallel
Strand 3	A	184	188	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	193	first strand
Strand 2	A	329	331	anti-parallel
Strand 3	A	317	324	anti-parallel
Strand 4	A	211	220	anti-parallel
Strand 5	A	245	249	parallel
Strand 6	A	272	275	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	493	495	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	518	521	anti-parallel
Strand 3	C	36	38	parallel
Strand 4	C	46	48	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	177	first strand
Strand 2	B	375	380	parallel
Strand 3	B	184	188	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	193	first strand
Strand 2	B	329	331	anti-parallel
Strand 3	B	317	324	anti-parallel
Strand 4	B	211	220	anti-parallel
Strand 5	B	245	249	parallel
Strand 6	B	272	275	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	493	495	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	518	521	anti-parallel
Strand 3	D	36	38	parallel
Strand 4	D	46	48	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	173	177	first strand
Strand 2	C	375	380	parallel
Strand 3	C	184	188	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	193	first strand
Strand 2	C	329	331	anti-parallel
Strand 3	C	317	324	anti-parallel
Strand 4	C	211	220	anti-parallel
Strand 5	C	245	249	parallel
Strand 6	C	272	275	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	410	412	first strand
Strand 2	C	493	495	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	518	521	anti-parallel
Strand 3	E	36	38	parallel
Strand 4	E	46	48	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	177	first strand
Strand 2	D	375	380	parallel
Strand 3	D	184	188	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	193	first strand
Strand 2	D	329	331	anti-parallel
Strand 3	D	317	324	anti-parallel
Strand 4	D	211	220	anti-parallel
Strand 5	D	245	249	parallel
Strand 6	D	272	275	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	412	first strand
Strand 2	D	493	495	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	518	521	anti-parallel
Strand 3	F	36	38	parallel
Strand 4	F	46	48	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	173	177	first strand
Strand 2	E	375	380	parallel
Strand 3	E	184	188	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	191	193	first strand
Strand 2	E	329	331	anti-parallel
Strand 3	E	317	324	anti-parallel
Strand 4	E	211	220	anti-parallel
Strand 5	E	245	249	parallel
Strand 6	E	272	275	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	410	412	first strand
Strand 2	E	493	495	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	173	177	first strand
Strand 2	F	375	380	parallel
Strand 3	F	184	188	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	191	193	first strand
Strand 2	F	329	331	anti-parallel
Strand 3	F	317	324	anti-parallel
Strand 4	F	211	220	anti-parallel
Strand 5	F	245	249	parallel
Strand 6	F	272	275	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	410	412	first strand
Strand 2	F	493	495	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U39

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U39