Analysis of interatomic Contacts of Structural Units in PDB entry:
8U3P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U3P entry

There are 4 chains in PDB entry 8U3P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 24ARG 740
B
GLY 24ARG 740
C
GLY 24ARG 740
D
GLY 24ARG 740
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are184 helices in PDB entry 8U3P. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
34 38Right-handed 310
Helix 3
AA3
A
44 49Right-handed 310
Helix 4
AA4
A
52 56Right-handed 310
Helix 5
AA5
A
63 69Right-handed alpha
Helix 6
AA6
A
72 85Right-handed alpha
Helix 7
AA7
A
93 97Right-handed 310
Helix 8
AA8
A
98 111Right-handed alpha
Helix 9
AA9
A
125 129Right-handed 310
Helix 10
AB1
A
131 139Right-handed 310
Helix 11
AB2
A
140 147Right-handed alpha
Helix 12
AB3
A
148 156Right-handed alpha
Helix 13
AB4
A
157 159Right-handed 310
Helix 14
AB5
A
160 176Right-handed alpha
Helix 15
AB6
A
234 238Right-handed 310
Helix 16
AB7
A
240 254Right-handed alpha
Helix 17
AB8
A
258 271Right-handed alpha
Helix 18
AB9
A
280 284Right-handed 310
Helix 19
AC1
A
287 291Right-handed 310
Helix 20
AC2
A
292 296Right-handed 310
Helix 21
AC3
A
308 312Right-handed 310
Helix 22
AC4
A
330 339Right-handed alpha
Helix 23
AC5
A
357 359Right-handed 310
Helix 24
AC6
A
378 387Right-handed alpha
Helix 25
AC7
A
387 400Right-handed alpha
Helix 26
AC8
A
400 418Right-handed alpha
Helix 27
AC9
A
422 426Right-handed 310
Helix 28
AD1
A
436 440Right-handed 310
Helix 29
AD2
A
451 464Right-handed alpha
Helix 30
AD3
A
468 481Right-handed alpha
Helix 31
AD4
A
495 499Right-handed 310
Helix 32
AD5
A
501 505Right-handed 310
Helix 33
AD6
A
513 530Right-handed alpha
Helix 34
AD7
A
539 559Right-handed alpha
Helix 35
AD8
A
575 579Right-handed 310
Helix 36
AD9
A
580 585Right-handed alpha
Helix 37
AE1
A
586 588Right-handed 310
Helix 38
AE2
A
593 596Right-handed 310
Helix 39
AE3
A
605 617Right-handed alpha
Helix 40
AE4
A
620 635Right-handed alpha
Helix 41
AE5
A
637 641Right-handed 310
Helix 42
AE6
A
655 662Right-handed alpha
Helix 43
AE7
A
693 701Right-handed alpha
Helix 44
AE8
A
701 712Right-handed alpha
Helix 45
AE9
A
716 733Right-handed alpha
Helix 46
AF1
A
736 740Right-handed 310
Helix 47
AF2
B
28 32Right-handed 310
Helix 48
AF3
B
34 38Right-handed 310
Helix 49
AF4
B
44 49Right-handed 310
Helix 50
AF5
B
52 56Right-handed 310
Helix 51
AF6
B
63 69Right-handed alpha
Helix 52
AF7
B
72 85Right-handed alpha
Helix 53
AF8
B
93 97Right-handed 310
Helix 54
AF9
B
98 111Right-handed alpha
Helix 55
AG1
B
125 129Right-handed 310
Helix 56
AG2
B
131 139Right-handed 310
Helix 57
AG3
B
140 148Right-handed alpha
Helix 58
AG4
B
148 156Right-handed alpha
Helix 59
AG5
B
157 159Right-handed 310
Helix 60
AG6
B
160 176Right-handed alpha
Helix 61
AG7
B
234 238Right-handed 310
Helix 62
AG8
B
240 254Right-handed alpha
Helix 63
AG9
B
258 271Right-handed alpha
Helix 64
AH1
B
280 284Right-handed 310
Helix 65
AH2
B
287 291Right-handed 310
Helix 66
AH3
B
292 296Right-handed 310
Helix 67
AH4
B
308 312Right-handed 310
Helix 68
AH5
B
330 339Right-handed alpha
Helix 69
AH6
B
357 359Right-handed 310
Helix 70
AH7
B
378 387Right-handed alpha
Helix 71
AH8
B
387 400Right-handed alpha
Helix 72
AH9
B
400 418Right-handed alpha
Helix 73
AI1
B
422 426Right-handed 310
Helix 74
AI2
B
436 440Right-handed 310
Helix 75
AI3
B
451 464Right-handed alpha
Helix 76
AI4
B
468 481Right-handed alpha
Helix 77
AI5
B
495 499Right-handed 310
Helix 78
AI6
B
501 505Right-handed 310
Helix 79
AI7
B
512 531Right-handed alpha
Helix 80
AI8
B
539 559Right-handed alpha
Helix 81
AI9
B
575 579Right-handed 310
Helix 82
AJ1
B
580 585Right-handed alpha
Helix 83
AJ2
B
586 588Right-handed 310
Helix 84
AJ3
B
593 596Right-handed 310
Helix 85
AJ4
B
605 617Right-handed alpha
Helix 86
AJ5
B
620 635Right-handed alpha
Helix 87
AJ6
B
637 641Right-handed 310
Helix 88
AJ7
B
655 662Right-handed alpha
Helix 89
AJ8
B
693 701Right-handed alpha
Helix 90
AJ9
B
701 712Right-handed alpha
Helix 91
AK1
B
716 733Right-handed alpha
Helix 92
AK2
B
736 740Right-handed 310
Helix 93
AK3
C
28 32Right-handed 310
Helix 94
AK4
C
34 38Right-handed 310
Helix 95
AK5
C
44 49Right-handed 310
Helix 96
AK6
C
52 56Right-handed 310
Helix 97
AK7
C
63 69Right-handed alpha
Helix 98
AK8
C
72 85Right-handed alpha
Helix 99
AK9
C
93 97Right-handed 310
Helix 100
AL1
C
98 111Right-handed alpha
Helix 101
AL2
C
125 129Right-handed 310
Helix 102
AL3
C
131 139Right-handed 310
Helix 103
AL4
C
140 148Right-handed alpha
Helix 104
AL5
C
148 156Right-handed alpha
Helix 105
AL6
C
157 159Right-handed 310
Helix 106
AL7
C
160 176Right-handed alpha
Helix 107
AL8
C
234 238Right-handed 310
Helix 108
AL9
C
240 254Right-handed alpha
Helix 109
AM1
C
258 271Right-handed alpha
Helix 110
AM2
C
280 284Right-handed 310
Helix 111
AM3
C
287 291Right-handed 310
Helix 112
AM4
C
292 296Right-handed 310
Helix 113
AM5
C
308 312Right-handed 310
Helix 114
AM6
C
330 339Right-handed alpha
Helix 115
AM7
C
357 359Right-handed 310
Helix 116
AM8
C
378 387Right-handed alpha
Helix 117
AM9
C
387 400Right-handed alpha
Helix 118
AN1
C
400 418Right-handed alpha
Helix 119
AN2
C
422 426Right-handed 310
Helix 120
AN3
C
436 440Right-handed 310
Helix 121
AN4
C
451 464Right-handed alpha
Helix 122
AN5
C
468 481Right-handed alpha
Helix 123
AN6
C
495 499Right-handed 310
Helix 124
AN7
C
501 505Right-handed 310
Helix 125
AN8
C
512 532Right-handed alpha
Helix 126
AN9
C
539 559Right-handed alpha
Helix 127
AO1
C
575 579Right-handed 310
Helix 128
AO2
C
580 585Right-handed alpha
Helix 129
AO3
C
586 588Right-handed 310
Helix 130
AO4
C
593 596Right-handed 310
Helix 131
AO5
C
605 617Right-handed alpha
Helix 132
AO6
C
620 635Right-handed alpha
Helix 133
AO7
C
637 641Right-handed 310
Helix 134
AO8
C
655 662Right-handed alpha
Helix 135
AO9
C
693 701Right-handed alpha
Helix 136
AP1
C
701 712Right-handed alpha
Helix 137
AP2
C
716 733Right-handed alpha
Helix 138
AP3
C
736 740Right-handed 310
Helix 139
AP4
D
28 32Right-handed 310
Helix 140
AP5
D
34 38Right-handed 310
Helix 141
AP6
D
44 49Right-handed 310
Helix 142
AP7
D
52 56Right-handed 310
Helix 143
AP8
D
63 69Right-handed alpha
Helix 144
AP9
D
72 85Right-handed alpha
Helix 145
AQ1
D
93 97Right-handed 310
Helix 146
AQ2
D
98 111Right-handed alpha
Helix 147
AQ3
D
125 129Right-handed 310
Helix 148
AQ4
D
131 139Right-handed 310
Helix 149
AQ5
D
140 148Right-handed alpha
Helix 150
AQ6
D
148 156Right-handed alpha
Helix 151
AQ7
D
157 159Right-handed 310
Helix 152
AQ8
D
160 176Right-handed alpha
Helix 153
AQ9
D
234 238Right-handed 310
Helix 154
AR1
D
240 254Right-handed alpha
Helix 155
AR2
D
258 271Right-handed alpha
Helix 156
AR3
D
280 284Right-handed 310
Helix 157
AR4
D
287 291Right-handed 310
Helix 158
AR5
D
292 296Right-handed 310
Helix 159
AR6
D
308 312Right-handed 310
Helix 160
AR7
D
330 339Right-handed alpha
Helix 161
AR8
D
357 359Right-handed 310
Helix 162
AR9
D
378 387Right-handed alpha
Helix 163
AS1
D
387 400Right-handed alpha
Helix 164
AS2
D
400 418Right-handed alpha
Helix 165
AS3
D
422 426Right-handed 310
Helix 166
AS4
D
436 440Right-handed 310
Helix 167
AS5
D
451 464Right-handed alpha
Helix 168
AS6
D
468 481Right-handed alpha
Helix 169
AS7
D
495 499Right-handed 310
Helix 170
AS8
D
501 505Right-handed 310
Helix 171
AS9
D
512 532Right-handed alpha
Helix 172
AT1
D
539 559Right-handed alpha
Helix 173
AT2
D
575 579Right-handed 310
Helix 174
AT3
D
580 585Right-handed alpha
Helix 175
AT4
D
586 588Right-handed 310
Helix 176
AT5
D
593 596Right-handed 310
Helix 177
AT6
D
605 617Right-handed alpha
Helix 178
AT7
D
620 635Right-handed alpha
Helix 179
AT8
D
637 641Right-handed 310
Helix 180
AT9
D
655 662Right-handed alpha
Helix 181
AU1
D
693 701Right-handed alpha
Helix 182
AU2
D
701 712Right-handed alpha
Helix 183
AU3
D
716 733Right-handed alpha
Helix 184
AU4
D
736 740Right-handed 310
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There are 16 sheets in PDB entry 8U3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
210 211first strand
Strand 2
A
215 216anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
341 345first strand
Strand 2
A
351 355anti-parallel
Strand 3
A
376 377anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
591 592first strand
Strand 2
A
597 598anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
667 670first strand
Strand 2
A
677 681anti-parallel
Strand 3
A
687 692anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
210 211first strand
Strand 2
B
215 216anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
341 345first strand
Strand 2
B
351 355anti-parallel
Strand 3
B
376 377anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
591 592first strand
Strand 2
B
597 598anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
667 670first strand
Strand 2
B
677 681anti-parallel
Strand 3
B
687 692anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
210 211first strand
Strand 2
C
215 216anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
341 345first strand
Strand 2
C
351 355anti-parallel
Strand 3
C
376 377anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
591 592first strand
Strand 2
C
597 598anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
667 670first strand
Strand 2
C
677 681anti-parallel
Strand 3
C
687 692anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
210 211first strand
Strand 2
D
215 216anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
341 345first strand
Strand 2
D
351 355anti-parallel
Strand 3
D
376 377anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
591 592first strand
Strand 2
D
597 598anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
667 670first strand
Strand 2
D
677 681anti-parallel
Strand 3
D
687 692anti-parallel
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