Analysis of interatomic Contacts of Structural Units in PDB entry:
8U3Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U3Z entry

There are 5 chains in PDB entry 8U3Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 439
B	MET 1	ASP 427
E	MET 1	ALA 430
F	MET 1	VAL 440
N	LYS 57	LYS 57

There are 89 helices in PDB entry 8U3Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	29	Right-handed alpha
Helix 2	AA2	A	45	51	Right-handed 310
Helix 3	AA3	A	71	81	Right-handed alpha
Helix 4	AA4	A	102	108	Right-handed alpha
Helix 5	AA5	A	110	129	Right-handed alpha
Helix 6	AA6	A	143	161	Right-handed alpha
Helix 7	AA7	A	182	196	Right-handed alpha
Helix 8	AA8	A	205	216	Right-handed alpha
Helix 9	AA9	A	223	240	Right-handed alpha
Helix 10	AB1	A	251	258	Right-handed alpha
Helix 11	AB2	A	277	282	Right-handed alpha
Helix 12	AB3	A	287	297	Right-handed alpha
Helix 13	AB4	A	306	310	Right-handed 310
Helix 14	AB5	A	324	338	Right-handed alpha
Helix 15	AB6	A	383	400	Right-handed alpha
Helix 16	AB7	A	404	411	Right-handed alpha
Helix 17	AB8	A	414	436	Right-handed alpha
Helix 18	AB9	B	10	29	Right-handed alpha
Helix 19	AC1	B	40	46	Right-handed alpha
Helix 20	AC2	B	47	49	Right-handed 310
Helix 21	AC3	B	55	57	Right-handed 310
Helix 22	AC4	B	69	79	Right-handed alpha
Helix 23	AC5	B	86	90	Right-handed 310
Helix 24	AC6	B	100	106	Right-handed alpha
Helix 25	AC7	B	107	127	Right-handed alpha
Helix 26	AC8	B	142	159	Right-handed alpha
Helix 27	AC9	B	180	195	Right-handed alpha
Helix 28	AD1	B	204	214	Right-handed alpha
Helix 29	AD2	B	221	237	Right-handed alpha
Helix 30	AD3	B	237	242	Right-handed alpha
Helix 31	AD4	B	249	258	Right-handed alpha
Helix 32	AD5	B	285	295	Right-handed alpha
Helix 33	AD6	B	323	337	Right-handed alpha
Helix 34	AD7	B	338	341	Right-handed 310
Helix 35	AD8	B	373	391	Right-handed alpha
Helix 36	AD9	B	394	402	Right-handed alpha
Helix 37	AE1	B	404	425	Right-handed alpha
Helix 38	AE2	E	10	28	Right-handed alpha
Helix 39	AE3	E	41	46	Right-handed alpha
Helix 40	AE4	E	47	49	Right-handed 310
Helix 41	AE5	E	55	57	Right-handed 310
Helix 42	AE6	E	70	78	Right-handed alpha
Helix 43	AE7	E	100	106	Right-handed alpha
Helix 44	AE8	E	111	126	Right-handed alpha
Helix 45	AE9	E	141	159	Right-handed alpha
Helix 46	AF1	E	180	193	Right-handed alpha
Helix 47	AF2	E	204	214	Right-handed alpha
Helix 48	AF3	E	221	237	Right-handed alpha
Helix 49	AF4	E	237	242	Right-handed alpha
Helix 50	AF5	E	249	258	Right-handed alpha
Helix 51	AF6	E	276	280	Right-handed 310
Helix 52	AF7	E	285	295	Right-handed alpha
Helix 53	AF8	E	304	308	Right-handed 310
Helix 54	AF9	E	323	337	Right-handed alpha
Helix 55	AG1	E	338	341	Right-handed 310
Helix 56	AG2	E	373	388	Right-handed alpha
Helix 57	AG3	E	394	400	Right-handed alpha
Helix 58	AG4	E	404	426	Right-handed alpha
Helix 59	AG5	F	10	28	Right-handed alpha
Helix 60	AG6	F	45	51	Right-handed 310
Helix 61	AG7	F	71	81	Right-handed alpha
Helix 62	AG8	F	110	129	Right-handed alpha
Helix 63	AG9	F	144	161	Right-handed alpha
Helix 64	AH1	F	182	197	Right-handed alpha
Helix 65	AH2	F	206	216	Right-handed alpha
Helix 66	AH3	F	223	239	Right-handed alpha
Helix 67	AH4	F	239	244	Right-handed alpha
Helix 68	AH5	F	251	260	Right-handed alpha
Helix 69	AH6	F	287	297	Right-handed alpha
Helix 70	AH7	F	306	310	Right-handed 310
Helix 71	AH8	F	324	337	Right-handed alpha
Helix 72	AH9	F	383	399	Right-handed alpha
Helix 73	AI1	F	404	412	Right-handed alpha
Helix 74	AI2	F	415	436	Right-handed alpha
Helix 75	AI3	N	70	80	Right-handed alpha
Helix 76	AI4	N	100	105	Right-handed alpha
Helix 77	AI5	N	118	122	Right-handed 310
Helix 78	AI6	N	124	139	Right-handed alpha
Helix 79	AI7	N	155	166	Right-handed alpha
Helix 80	AI8	N	257	262	Right-handed alpha
Helix 81	AI9	N	264	269	Right-handed alpha
Helix 82	AJ1	N	285	296	Right-handed alpha
Helix 83	AJ2	N	300	317	Right-handed alpha
Helix 84	AJ3	N	318	330	Right-handed alpha
Helix 85	AJ4	N	370	388	Right-handed alpha
Helix 86	AJ5	N	394	411	Right-handed alpha
Helix 87	AJ6	N	414	441	Right-handed alpha
Helix 88	AJ7	N	452	473	Right-handed alpha
Helix 89	AJ8	N	479	499	Right-handed alpha

There are 17 sheets in PDB entry 8U3Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	65	69	parallel
Strand 3	A	4	9	parallel
Strand 4	A	134	140	parallel
Strand 5	A	165	171	parallel
Strand 6	A	200	204	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	380	anti-parallel
Strand 3	A	314	321	anti-parallel
Strand 4	A	351	354	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	3	9	parallel
Strand 4	B	130	138	parallel
Strand 5	B	163	170	parallel
Strand 6	B	198	203	parallel
Strand 7	B	265	266	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	59	61	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	271	first strand
Strand 2	B	364	371	anti-parallel
Strand 3	B	310	318	anti-parallel
Strand 4	B	349	354	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	92	first strand
Strand 2	E	63	67	parallel
Strand 3	E	3	9	parallel
Strand 4	E	130	136	parallel
Strand 5	E	163	170	parallel
Strand 6	E	198	203	parallel
Strand 7	E	265	266	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	53	first strand
Strand 2	E	59	61	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	270	271	first strand
Strand 2	E	363	371	anti-parallel
Strand 3	E	310	319	anti-parallel
Strand 4	E	349	354	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	68	first strand
Strand 2	F	5	9	parallel
Strand 3	F	134	140	parallel
Strand 4	F	165	171	parallel
Strand 5	F	200	204	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	55	first strand
Strand 2	F	61	63	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	269	270	first strand
Strand 2	F	373	381	anti-parallel
Strand 3	F	312	321	anti-parallel
Strand 4	F	351	354	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	82	83	first strand
Strand 2	N	61	63	parallel
Strand 3	N	92	93	parallel
Strand 4	N	112	113	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	149	151	first strand
Strand 2	N	199	203	anti-parallel
Strand 3	N	171	175	anti-parallel
Strand 4	N	185	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	210	211	first strand
Strand 2	N	214	220	anti-parallel
Strand 3	N	239	242	anti-parallel
Strand 4	N	283	284	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	210	211	first strand
Strand 2	N	214	220	anti-parallel
Strand 3	N	344	349	anti-parallel
Strand 4	N	355	361	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	341	342	first strand
Strand 2	N	222	226	anti-parallel
Strand 3	N	231	235	anti-parallel
Strand 4	N	444	448	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U3Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U3Z