Analysis of interatomic Contacts of Structural Units in PDB entry:
8U44

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U44 entry

There are 8 chains in PDB entry 8U44 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
V	GLU 1	SER 121
X	ASP 1	LYS 107
A	GLY 10	PRO 324
B	GLY 1	ILE 173
S	GLU 1	SER 121
T	ASP 1	LYS 107
G	GLY 10	PRO 324
I	GLY 1	VAL 18

There are 30 helices in PDB entry 8U44. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	V	85	89	Right-handed 310
Helix 2	AA2	A	65	71	Right-handed alpha
Helix 3	AA3	A	73	77	Right-handed 310
Helix 4	AA4	A	104	112	Right-handed alpha
Helix 5	AA5	A	187	195	Right-handed alpha
Helix 6	AA6	B	37	58	Right-handed alpha
Helix 7	AA7	B	74	127	Right-handed alpha
Helix 8	AA8	B	134	136	Right-handed 310
Helix 9	AA9	B	145	154	Right-handed alpha
Helix 10	AB1	B	159	170	Right-handed alpha
Helix 11	AB2	S	85	89	Right-handed 310
Helix 12	AB3	G	65	71	Right-handed alpha
Helix 13	AB4	G	73	77	Right-handed 310
Helix 14	AB5	G	104	112	Right-handed alpha
Helix 15	AB6	G	187	195	Right-handed alpha
Helix 16	AB7	I	37	58	Right-handed alpha
Helix 17	AB8	I	74	127	Right-handed alpha
Helix 18	AB9	I	134	136	Right-handed 310
Helix 19	AC1	I	145	154	Right-handed alpha
Helix 20	AC2	I	159	170	Right-handed alpha
Helix 21	AC3	U	85	89	Right-handed 310
Helix 22	AC4	H	65	71	Right-handed alpha
Helix 23	AC5	H	73	77	Right-handed 310
Helix 24	AC6	H	104	112	Right-handed alpha
Helix 25	AC7	H	187	195	Right-handed alpha
Helix 26	AC8	J	37	58	Right-handed alpha
Helix 27	AC9	J	74	127	Right-handed alpha
Helix 28	AD1	J	134	136	Right-handed 310
Helix 29	AD2	J	145	154	Right-handed alpha
Helix 30	AD3	J	159	170	Right-handed alpha

There are 42 sheets in PDB entry 8U44. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	5	6	first strand
Strand 2	V	20	23	anti-parallel
Strand 3	V	76	81	anti-parallel
Strand 4	V	66	71	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	10	12	first strand
Strand 2	V	115	119	parallel
Strand 3	V	90	95	anti-parallel
Strand 4	V	33	37	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	47	49	first strand
Strand 2	V	56	58	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	4	7	first strand
Strand 2	X	19	25	anti-parallel
Strand 3	X	70	75	anti-parallel
Strand 4	X	62	67	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	53	54	first strand
Strand 2	X	45	49	anti-parallel
Strand 3	X	34	38	anti-parallel
Strand 4	X	85	87	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	26	first strand
Strand 2	A	34	35	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	41	first strand
Strand 2	A	315	317	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	89	first strand
Strand 2	A	268	269	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	229	237	parallel
Strand 3	A	176	184	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	253	254	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	170	first strand
Strand 2	A	241	247	anti-parallel
Strand 3	A	202	205	anti-parallel
Strand 4	A	212	213	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	287	first strand
Strand 2	A	281	283	anti-parallel
Strand 3	A	302	303	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	307	308	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	132	first strand
Strand 2	B	138	140	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	5	6	first strand
Strand 2	S	20	23	anti-parallel
Strand 3	S	76	81	anti-parallel
Strand 4	S	66	71	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	90	95	anti-parallel
Strand 4	S	33	37	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	47	49	first strand
Strand 2	S	56	58	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	4	7	first strand
Strand 2	T	19	25	anti-parallel
Strand 3	T	70	75	anti-parallel
Strand 4	T	62	67	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	53	54	first strand
Strand 2	T	45	49	anti-parallel
Strand 3	T	34	38	anti-parallel
Strand 4	T	85	87	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	26	first strand
Strand 2	G	34	35	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	41	first strand
Strand 2	G	315	317	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	88	89	first strand
Strand 2	G	268	269	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	100	102	first strand
Strand 2	G	229	237	parallel
Strand 3	G	176	184	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	152	first strand
Strand 2	G	253	254	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	167	170	first strand
Strand 2	G	241	247	anti-parallel
Strand 3	G	202	205	anti-parallel
Strand 4	G	212	213	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	286	287	first strand
Strand 2	G	281	283	anti-parallel
Strand 3	G	302	303	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	294	295	first strand
Strand 2	G	307	308	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	130	132	first strand
Strand 2	I	138	140	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	5	6	first strand
Strand 2	U	20	23	anti-parallel
Strand 3	U	76	81	anti-parallel
Strand 4	U	66	71	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	10	12	first strand
Strand 2	U	115	119	parallel
Strand 3	U	90	95	anti-parallel
Strand 4	U	33	37	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	47	49	first strand
Strand 2	U	56	58	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	4	7	first strand
Strand 2	W	19	25	anti-parallel
Strand 3	W	70	75	anti-parallel
Strand 4	W	62	67	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	53	54	first strand
Strand 2	W	45	49	anti-parallel
Strand 3	W	34	38	anti-parallel
Strand 4	W	85	87	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	25	26	first strand
Strand 2	H	34	35	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	39	41	first strand
Strand 2	H	315	317	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	88	89	first strand
Strand 2	H	268	269	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	100	102	first strand
Strand 2	H	229	237	parallel
Strand 3	H	176	184	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	152	first strand
Strand 2	H	253	254	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	167	170	first strand
Strand 2	H	241	247	anti-parallel
Strand 3	H	202	205	anti-parallel
Strand 4	H	212	213	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	286	287	first strand
Strand 2	H	281	283	anti-parallel
Strand 3	H	302	303	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	294	295	first strand
Strand 2	H	307	308	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	130	132	first strand
Strand 2	J	138	140	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U44

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U44