Analysis of interatomic Contacts of Structural Units in PDB entry:
8U4D

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U4D entry

There are 4 chains in PDB entry 8U4D (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 177	GLY 764
D	LEU 177	GLY 764
B	LEU 177	GLY 764
C	LEU 177	GLY 764

There are100 helices in PDB entry 8U4D. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	203	211	Right-handed alpha
Helix 2	AA2	A	213	223	Right-handed alpha
Helix 3	AA3	A	233	237	Right-handed 310
Helix 4	AA4	A	250	258	Right-handed alpha
Helix 5	AA5	A	260	269	Right-handed alpha
Helix 6	AA6	A	286	295	Right-handed alpha
Helix 7	AA7	A	298	320	Right-handed alpha
Helix 8	AA8	A	324	328	Right-handed 310
Helix 9	AA9	A	335	344	Right-handed alpha
Helix 10	AB1	A	345	354	Right-handed alpha
Helix 11	AB2	A	362	366	Right-handed 310
Helix 12	AB3	A	394	401	Right-handed alpha
Helix 13	AB4	A	411	414	Right-handed 310
Helix 14	AB5	A	415	454	Right-handed alpha
Helix 15	AB6	A	468	500	Right-handed alpha
Helix 16	AB7	A	504	509	Right-handed alpha
Helix 17	AB8	A	510	532	Right-handed alpha
Helix 18	AB9	A	536	551	Right-handed alpha
Helix 19	AC1	A	552	557	Right-handed 310
Helix 20	AC2	A	559	575	Right-handed alpha
Helix 21	AC3	A	575	599	Right-handed alpha
Helix 22	AC4	A	629	642	Right-handed alpha
Helix 23	AC5	A	655	671	Right-handed alpha
Helix 24	AC6	A	673	689	Right-handed alpha
Helix 25	AC7	A	689	711	Right-handed alpha
Helix 26	AC8	D	203	211	Right-handed alpha
Helix 27	AC9	D	213	223	Right-handed alpha
Helix 28	AD1	D	233	237	Right-handed 310
Helix 29	AD2	D	250	258	Right-handed alpha
Helix 30	AD3	D	260	269	Right-handed alpha
Helix 31	AD4	D	286	295	Right-handed alpha
Helix 32	AD5	D	298	320	Right-handed alpha
Helix 33	AD6	D	324	328	Right-handed 310
Helix 34	AD7	D	335	344	Right-handed alpha
Helix 35	AD8	D	345	354	Right-handed alpha
Helix 36	AD9	D	362	366	Right-handed 310
Helix 37	AE1	D	394	401	Right-handed alpha
Helix 38	AE2	D	411	414	Right-handed 310
Helix 39	AE3	D	415	454	Right-handed alpha
Helix 40	AE4	D	468	500	Right-handed alpha
Helix 41	AE5	D	504	509	Right-handed alpha
Helix 42	AE6	D	510	532	Right-handed alpha
Helix 43	AE7	D	536	551	Right-handed alpha
Helix 44	AE8	D	552	557	Right-handed 310
Helix 45	AE9	D	559	575	Right-handed alpha
Helix 46	AF1	D	575	599	Right-handed alpha
Helix 47	AF2	D	629	642	Right-handed alpha
Helix 48	AF3	D	655	671	Right-handed alpha
Helix 49	AF4	D	673	689	Right-handed alpha
Helix 50	AF5	D	689	711	Right-handed alpha
Helix 51	AF6	B	203	211	Right-handed alpha
Helix 52	AF7	B	213	223	Right-handed alpha
Helix 53	AF8	B	233	237	Right-handed 310
Helix 54	AF9	B	250	258	Right-handed alpha
Helix 55	AG1	B	260	269	Right-handed alpha
Helix 56	AG2	B	286	295	Right-handed alpha
Helix 57	AG3	B	298	320	Right-handed alpha
Helix 58	AG4	B	324	328	Right-handed 310
Helix 59	AG5	B	335	344	Right-handed alpha
Helix 60	AG6	B	345	354	Right-handed alpha
Helix 61	AG7	B	362	366	Right-handed 310
Helix 62	AG8	B	394	401	Right-handed alpha
Helix 63	AG9	B	411	414	Right-handed 310
Helix 64	AH1	B	415	454	Right-handed alpha
Helix 65	AH2	B	468	500	Right-handed alpha
Helix 66	AH3	B	504	509	Right-handed alpha
Helix 67	AH4	B	510	532	Right-handed alpha
Helix 68	AH5	B	536	551	Right-handed alpha
Helix 69	AH6	B	552	557	Right-handed 310
Helix 70	AH7	B	559	575	Right-handed alpha
Helix 71	AH8	B	575	599	Right-handed alpha
Helix 72	AH9	B	629	642	Right-handed alpha
Helix 73	AI1	B	655	671	Right-handed alpha
Helix 74	AI2	B	673	689	Right-handed alpha
Helix 75	AI3	B	689	711	Right-handed alpha
Helix 76	AI4	C	203	211	Right-handed alpha
Helix 77	AI5	C	213	223	Right-handed alpha
Helix 78	AI6	C	233	237	Right-handed 310
Helix 79	AI7	C	250	258	Right-handed alpha
Helix 80	AI8	C	260	269	Right-handed alpha
Helix 81	AI9	C	286	295	Right-handed alpha
Helix 82	AJ1	C	298	320	Right-handed alpha
Helix 83	AJ2	C	324	328	Right-handed 310
Helix 84	AJ3	C	335	344	Right-handed alpha
Helix 85	AJ4	C	345	354	Right-handed alpha
Helix 86	AJ5	C	362	366	Right-handed 310
Helix 87	AJ6	C	394	401	Right-handed alpha
Helix 88	AJ7	C	411	414	Right-handed 310
Helix 89	AJ8	C	415	454	Right-handed alpha
Helix 90	AJ9	C	468	500	Right-handed alpha
Helix 91	AK1	C	504	509	Right-handed alpha
Helix 92	AK2	C	510	532	Right-handed alpha
Helix 93	AK3	C	536	551	Right-handed alpha
Helix 94	AK4	C	552	557	Right-handed 310
Helix 95	AK5	C	559	575	Right-handed alpha
Helix 96	AK6	C	575	599	Right-handed alpha
Helix 97	AK7	C	629	642	Right-handed alpha
Helix 98	AK8	C	655	671	Right-handed alpha
Helix 99	AK9	C	673	689	Right-handed alpha
Helix 100	AL1	C	689	711	Right-handed alpha

There are 4 sheets in PDB entry 8U4D. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	374	first strand
Strand 2	A	377	383	anti-parallel
Strand 3	A	736	747	anti-parallel
Strand 4	A	723	730	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	368	374	first strand
Strand 2	D	377	383	anti-parallel
Strand 3	D	736	747	anti-parallel
Strand 4	D	723	730	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	368	374	first strand
Strand 2	B	377	383	anti-parallel
Strand 3	B	736	747	anti-parallel
Strand 4	B	723	730	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	374	first strand
Strand 2	C	377	383	anti-parallel
Strand 3	C	736	747	anti-parallel
Strand 4	C	723	730	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U4D

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U4D