Analysis of interatomic Contacts of Structural Units in PDB entry:
8U4E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U4E entry

There are 2 chains in PDB entry 8U4E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 3	VAL 917
B	HIS 1	THR 593

There are 34 helices in PDB entry 8U4E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	26	Right-handed 310
Helix 2	AA2	A	42	47	Right-handed 310
Helix 3	AA3	A	132	137	Right-handed alpha
Helix 4	AA4	A	255	268	Right-handed alpha
Helix 5	AA5	A	323	329	Right-handed alpha
Helix 6	AA6	A	352	358	Right-handed alpha
Helix 7	AA7	A	435	447	Right-handed alpha
Helix 8	AA8	A	496	500	Right-handed 310
Helix 9	AA9	A	638	644	Right-handed 310
Helix 10	AB1	A	692	714	Right-handed alpha
Helix 11	AB2	A	875	881	Right-handed alpha
Helix 12	AB3	B	16	24	Right-handed 310
Helix 13	AB4	B	42	49	Right-handed alpha
Helix 14	AB5	B	71	75	Right-handed 310
Helix 15	AB6	B	139	143	Right-handed 310
Helix 16	AB7	B	148	153	Right-handed alpha
Helix 17	AB8	B	221	225	Right-handed 310
Helix 18	AB9	B	256	269	Right-handed alpha
Helix 19	AC1	B	314	316	Right-handed 310
Helix 20	AC2	B	323	329	Right-handed alpha
Helix 21	AC3	B	350	358	Right-handed alpha
Helix 22	AC4	B	378	382	Right-handed 310
Helix 23	AC5	B	435	447	Right-handed alpha
Helix 24	AC6	B	448	452	Right-handed 310
Helix 25	AC7	B	638	643	Right-handed 310
Helix 26	AC8	B	700	715	Right-handed alpha
Helix 27	AC9	B	875	881	Right-handed alpha
Helix 28	AD1	C	13	22	Right-handed alpha
Helix 29	AD2	C	53	60	Right-handed alpha
Helix 30	AD3	D	11	17	Right-handed alpha
Helix 31	AD4	D	42	47	Right-handed alpha
Helix 32	AD5	D	53	58	Right-handed alpha
Helix 33	AD6	E	11	22	Right-handed alpha
Helix 34	AD7	E	53	59	Right-handed alpha

There are 33 sheets in PDB entry 8U4E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	33	35	parallel
Strand 3	A	61	66	parallel
Strand 4	A	91	98	parallel
Strand 5	A	116	122	parallel
Strand 6	A	144	145	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	81	82	parallel
Strand 3	A	111	112	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	216	first strand
Strand 2	A	225	228	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	236	238	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	248	first strand
Strand 2	A	252	254	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	283	285	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	294	first strand
Strand 2	A	301	303	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	314	first strand
Strand 2	A	335	342	parallel
Strand 3	A	363	364	parallel
Strand 4	A	387	388	parallel
Strand 5	A	420	421	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	321	first strand
Strand 2	A	335	342	parallel
Strand 3	A	368	371	parallel
Strand 4	A	400	403	parallel
Strand 5	A	426	429	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	473	first strand
Strand 2	A	582	583	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	477	first strand
Strand 2	A	486	489	anti-parallel
Strand 3	A	551	552	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	534	first strand
Strand 2	A	503	509	anti-parallel
Strand 3	A	561	567	anti-parallel
Strand 4	A	586	589	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	599	604	first strand
Strand 2	A	611	616	anti-parallel
Strand 3	A	779	782	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	771	774	first strand
Strand 2	A	627	634	anti-parallel
Strand 3	A	790	798	anti-parallel
Strand 4	A	811	816	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	840	842	first strand
Strand 2	A	884	886	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	868	874	first strand
Strand 2	A	854	862	anti-parallel
Strand 3	A	897	902	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	892	894	first strand
Strand 2	A	915	917	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	33	38	parallel
Strand 3	B	61	66	parallel
Strand 4	B	93	96	parallel
Strand 5	B	117	120	parallel
Strand 6	B	144	146	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	29	first strand
Strand 2	B	56	57	parallel
Strand 3	B	81	82	parallel
Strand 4	B	111	112	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	173	first strand
Strand 2	B	178	180	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	248	first strand
Strand 2	B	252	255	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	278	279	first strand
Strand 2	B	284	285	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	293	294	first strand
Strand 2	B	301	302	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	312	first strand
Strand 2	B	335	336	parallel
Strand 3	B	363	364	parallel
Strand 4	B	387	388	parallel
Strand 5	B	420	421	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	321	first strand
Strand 2	B	339	342	parallel
Strand 3	B	368	371	parallel
Strand 4	B	400	403	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	472	473	first strand
Strand 2	B	582	583	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	479	first strand
Strand 2	B	486	488	anti-parallel
Strand 3	B	551	552	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	530	534	first strand
Strand 2	B	503	509	anti-parallel
Strand 3	B	561	567	anti-parallel
Strand 4	B	586	589	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	599	604	first strand
Strand 2	B	611	616	anti-parallel
Strand 3	B	779	782	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	771	774	first strand
Strand 2	B	627	634	anti-parallel
Strand 3	B	790	800	anti-parallel
Strand 4	B	806	807	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	771	774	first strand
Strand 2	B	627	634	anti-parallel
Strand 3	B	790	800	anti-parallel
Strand 4	B	813	816	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	831	834	first strand
Strand 2	B	840	843	anti-parallel
Strand 3	B	884	886	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	868	874	first strand
Strand 2	B	854	863	anti-parallel
Strand 3	B	894	902	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U4E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U4E