Analysis of interatomic Contacts of Structural Units in PDB entry:
8U4F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U4F entry

There is 1 chain in PDB entry 8U4F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 4PRO 617
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8U4F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 22Right-handed alpha
Helix 2
AA2
A
44 48Right-handed 310
Helix 3
AA3
A
65 82Right-handed alpha
Helix 4
AA4
A
82 89Right-handed alpha
Helix 5
AA5
A
91 110Right-handed alpha
Helix 6
AA6
A
122 128Right-handed alpha
Helix 7
AA7
A
132 136Right-handed 310
Helix 8
AA8
A
151 170Right-handed alpha
Helix 9
AA9
A
173 194Right-handed alpha
Helix 10
AB1
A
197 201Right-handed 310
Helix 11
AB2
A
202 204Right-handed 310
Helix 12
AB3
A
205 210Right-handed alpha
Helix 13
AB4
A
215 231Right-handed alpha
Helix 14
AB5
A
232 244Right-handed alpha
Helix 15
AB6
A
245 247Right-handed 310
Helix 16
AB7
A
248 252Right-handed 310
Helix 17
AB8
A
263 276Right-handed alpha
Helix 18
AB9
A
277 292Right-handed alpha
Helix 19
AC1
A
318 335Right-handed alpha
Helix 20
AC2
A
339 357Right-handed alpha
Helix 21
AC3
A
380 385Right-handed alpha
Helix 22
AC4
A
421 426Right-handed alpha
Helix 23
AC5
A
428 447Right-handed alpha
Helix 24
AC6
A
508 514Right-handed alpha
Helix 25
AC7
A
517 521Right-handed 310
Helix 26
AC8
A
541 543Right-handed 310
Helix 27
AC9
A
583 591Right-handed 310
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There are 5 sheets in PDB entry 8U4F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 64first strand
Strand 2
A
115 120anti-parallel
Strand 3
A
142 146anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 296first strand
Strand 2
A
301 302anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
522 528first strand
Strand 2
A
566 574anti-parallel
Strand 3
A
479 488anti-parallel
Strand 4
A
466 476anti-parallel
Strand 5
A
598 599anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 533first strand
Strand 2
A
545 551anti-parallel
Strand 3
A
537 540anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
532 533first strand
Strand 2
A
545 551anti-parallel
Strand 3
A
500 507anti-parallel
Strand 4
A
605 607anti-parallel
Strand 5
A
610 613anti-parallel
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