Analysis of interatomic Contacts of Structural Units in PDB entry:
8U4V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U4V entry

There are 5 chains in PDB entry 8U4V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 5ASN 184
B
 GLU 198PHE 319
L
 ASP 26GLU 238
H
 GLU 27LYS 254
K
 VAL 2SER 120
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8U4V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 27Right-handed alpha
Helix 2
AA2
A
69 73Right-handed 310
Helix 3
AA3
A
74 101Right-handed alpha
Helix 4
AA4
A
110 149Right-handed alpha
Helix 5
AA5
A
161 183Right-handed alpha
Helix 6
AA6
B
211 217Right-handed alpha
Helix 7
AA7
B
267 270Right-handed 310
Helix 8
AA8
L
104 108Right-handed 310
Helix 9
AA9
L
146 153Right-handed alpha
Helix 10
AB1
L
208 212Right-handed alpha
Helix 11
AB2
H
54 57Right-handed 310
Helix 12
AB3
H
113 117Right-handed 310
Helix 13
AB4
H
130 137Right-handed alpha
Helix 14
AB5
H
196 198Right-handed 310
Helix 15
AB6
H
225 229Right-handed 310
Helix 16
AB7
K
53 57Right-handed 310
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There are 17 sheets in PDB entry 8U4V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 66first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
44 48anti-parallel
Strand 4
A
31 35anti-parallel
Strand 5
A
159 160anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 210first strand
Strand 2
B
238 244parallel
Strand 3
B
294 302anti-parallel
Strand 4
B
259 265anti-parallel
Strand 5
B
272 277anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 227first strand
Strand 2
B
313 318anti-parallel
Strand 3
B
249 255anti-parallel
Strand 4
B
285 291anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
29 32first strand
Strand 2
L
44 50anti-parallel
Strand 3
L
95 100anti-parallel
Strand 4
L
87 92anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
35 38first strand
Strand 2
L
127 131parallel
Strand 3
L
110 116anti-parallel
Strand 4
L
59 63anti-parallel
Strand 5
L
70 74anti-parallel
Strand 6
L
78 79anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
35 38first strand
Strand 2
L
127 131parallel
Strand 3
L
110 116anti-parallel
Strand 4
L
121 123anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
139 143first strand
Strand 2
L
154 164anti-parallel
Strand 3
L
198 207anti-parallel
Strand 4
L
184 188anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
169 174first strand
Strand 2
L
216 223anti-parallel
Strand 3
L
230 235anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
29 33first strand
Strand 2
H
43 51anti-parallel
Strand 3
H
104 110anti-parallel
Strand 4
H
94 99anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
37 38first strand
Strand 2
H
147 151parallel
Strand 3
H
118 126anti-parallel
Strand 4
H
59 65anti-parallel
Strand 5
H
71 78anti-parallel
Strand 6
H
84 86anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
37 38first strand
Strand 2
H
147 151parallel
Strand 3
H
118 126anti-parallel
Strand 4
H
140 143anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
161 164first strand
Strand 2
H
176 185anti-parallel
Strand 3
H
216 224anti-parallel
Strand 4
H
203 205anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
161 164first strand
Strand 2
H
176 185anti-parallel
Strand 3
H
216 224anti-parallel
Strand 4
H
209 210anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
191 194first strand
Strand 2
H
234 240anti-parallel
Strand 3
H
245 251anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
3 6first strand
Strand 2
K
16 25anti-parallel
Strand 3
K
78 86anti-parallel
Strand 4
K
68 73anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
59 60first strand
Strand 2
K
45 50anti-parallel
Strand 3
K
33 39anti-parallel
Strand 4
K
95 99anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
92 93first strand
Strand 2
K
116 117anti-parallel
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