Analysis of interatomic Contacts of Structural Units in PDB entry:
8U53


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U53 entry

There are 2 chains in PDB entry 8U53 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2SER 697
B
 GLU 2SER 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 8U53. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 28Right-handed alpha
Helix 2
AA2
A
29 32Right-handed 310
Helix 3
AA3
A
33 38Right-handed alpha
Helix 4
AA4
A
38 44Right-handed alpha
Helix 5
AA5
A
59 67Right-handed alpha
Helix 6
AA6
A
69 78Right-handed alpha
Helix 7
AA7
A
78 102Right-handed alpha
Helix 8
AA8
A
155 184Right-handed alpha
Helix 9
AA9
A
188 191Right-handed 310
Helix 10
AB1
A
207 220Right-handed alpha
Helix 11
AB2
A
235 246Right-handed alpha
Helix 12
AB3
A
281 303Right-handed alpha
Helix 13
AB4
A
317 325Right-handed alpha
Helix 14
AB5
A
343 347Right-handed 310
Helix 15
AB6
A
348 352Right-handed 310
Helix 16
AB7
A
355 377Right-handed alpha
Helix 17
AB8
A
377 388Right-handed alpha
Helix 18
AB9
A
411 415Right-handed alpha
Helix 19
AC1
A
416 427Right-handed alpha
Helix 20
AC2
A
428 439Right-handed alpha
Helix 21
AC3
A
444 463Right-handed alpha
Helix 22
AC4
A
464 474Right-handed alpha
Helix 23
AC5
A
490 498Right-handed alpha
Helix 24
AC6
A
501 523Right-handed alpha
Helix 25
AC7
A
523 537Right-handed alpha
Helix 26
AC8
A
540 549Right-handed alpha
Helix 27
AC9
A
554 573Right-handed alpha
Helix 28
AD1
A
578 601Right-handed alpha
Helix 29
AD2
A
612 638Right-handed alpha
Helix 30
AD3
A
642 645Right-handed 310
Helix 31
AD4
A
646 665Right-handed alpha
Helix 32
AD5
A
666 669Right-handed 310
Helix 33
AD6
A
672 677Right-handed alpha
Helix 34
AD7
A
685 692Right-handed alpha
Helix 35
AD8
B
3 28Right-handed alpha
Helix 36
AD9
B
29 32Right-handed 310
Helix 37
AE1
B
33 38Right-handed alpha
Helix 38
AE2
B
38 44Right-handed alpha
Helix 39
AE3
B
59 67Right-handed alpha
Helix 40
AE4
B
69 78Right-handed alpha
Helix 41
AE5
B
78 102Right-handed alpha
Helix 42
AE6
B
155 184Right-handed alpha
Helix 43
AE7
B
188 191Right-handed 310
Helix 44
AE8
B
207 220Right-handed alpha
Helix 45
AE9
B
235 246Right-handed alpha
Helix 46
AF1
B
281 303Right-handed alpha
Helix 47
AF2
B
317 325Right-handed alpha
Helix 48
AF3
B
343 347Right-handed 310
Helix 49
AF4
B
348 352Right-handed 310
Helix 50
AF5
B
355 377Right-handed alpha
Helix 51
AF6
B
377 388Right-handed alpha
Helix 52
AF7
B
411 415Right-handed alpha
Helix 53
AF8
B
416 427Right-handed alpha
Helix 54
AF9
B
428 439Right-handed alpha
Helix 55
AG1
B
444 463Right-handed alpha
Helix 56
AG2
B
464 474Right-handed alpha
Helix 57
AG3
B
490 498Right-handed alpha
Helix 58
AG4
B
501 523Right-handed alpha
Helix 59
AG5
B
523 537Right-handed alpha
Helix 60
AG6
B
540 549Right-handed alpha
Helix 61
AG7
B
554 573Right-handed alpha
Helix 62
AG8
B
578 601Right-handed alpha
Helix 63
AG9
B
612 638Right-handed alpha
Helix 64
AH1
B
642 645Right-handed 310
Helix 65
AH2
B
646 665Right-handed alpha
Helix 66
AH3
B
666 669Right-handed 310
Helix 67
AH4
B
672 677Right-handed alpha
Helix 68
AH5
B
685 692Right-handed alpha
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There are 2 sheets in PDB entry 8U53. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
311 314anti-parallel
Strand 3
A
193 197anti-parallel
Strand 4
A
337 340anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 229first strand
Strand 2
B
311 314anti-parallel
Strand 3
B
193 197anti-parallel
Strand 4
B
337 340anti-parallel
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