Analysis of interatomic Contacts of Structural Units in PDB entry:
8U54


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U54 entry

There are 2 chains in PDB entry 8U54 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 34LEU 834
B
 PRO 34LEU 834
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 8U54. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 40Right-handed 310
Helix 2
AA2
A
41 62Right-handed alpha
Helix 3
AA3
A
66 80Right-handed alpha
Helix 4
AA4
A
80 93Right-handed alpha
Helix 5
AA5
A
99 125Right-handed alpha
Helix 6
AA6
A
129 143Right-handed alpha
Helix 7
AA7
A
149 159Right-handed alpha
Helix 8
AA8
A
164 197Right-handed alpha
Helix 9
AA9
A
202 217Right-handed alpha
Helix 10
AB1
A
217 233Right-handed alpha
Helix 11
AB2
A
241 264Right-handed alpha
Helix 12
AB3
A
272 288Right-handed alpha
Helix 13
AB4
A
288 302Right-handed alpha
Helix 14
AB5
A
306 322Right-handed alpha
Helix 15
AB6
A
326 337Right-handed alpha
Helix 16
AB7
A
339 367Right-handed alpha
Helix 17
AB8
A
368 370Right-handed 310
Helix 18
AB9
A
371 404Right-handed alpha
Helix 19
AC1
A
405 409Right-handed 310
Helix 20
AC2
A
411 436Right-handed alpha
Helix 21
AC3
A
442 473Right-handed alpha
Helix 22
AC4
A
480 503Right-handed alpha
Helix 23
AC5
A
511 515Right-handed 310
Helix 24
AC6
A
516 549Right-handed alpha
Helix 25
AC7
A
644 682Right-handed alpha
Helix 26
AC8
A
686 712Right-handed alpha
Helix 27
AC9
A
714 720Right-handed alpha
Helix 28
AD1
A
744 757Right-handed alpha
Helix 29
AD2
A
757 767Right-handed alpha
Helix 30
AD3
A
783 793Right-handed alpha
Helix 31
AD4
A
798 812Right-handed alpha
Helix 32
AD5
B
38 40Right-handed 310
Helix 33
AD6
B
41 62Right-handed alpha
Helix 34
AD7
B
66 80Right-handed alpha
Helix 35
AD8
B
80 93Right-handed alpha
Helix 36
AD9
B
99 125Right-handed alpha
Helix 37
AE1
B
129 143Right-handed alpha
Helix 38
AE2
B
149 159Right-handed alpha
Helix 39
AE3
B
164 197Right-handed alpha
Helix 40
AE4
B
202 217Right-handed alpha
Helix 41
AE5
B
217 233Right-handed alpha
Helix 42
AE6
B
241 264Right-handed alpha
Helix 43
AE7
B
272 288Right-handed alpha
Helix 44
AE8
B
288 302Right-handed alpha
Helix 45
AE9
B
306 322Right-handed alpha
Helix 46
AF1
B
326 337Right-handed alpha
Helix 47
AF2
B
339 367Right-handed alpha
Helix 48
AF3
B
368 370Right-handed 310
Helix 49
AF4
B
371 404Right-handed alpha
Helix 50
AF5
B
405 409Right-handed 310
Helix 51
AF6
B
411 436Right-handed alpha
Helix 52
AF7
B
442 473Right-handed alpha
Helix 53
AF8
B
480 503Right-handed alpha
Helix 54
AF9
B
511 515Right-handed 310
Helix 55
AG1
B
516 549Right-handed alpha
Helix 56
AG2
B
644 682Right-handed alpha
Helix 57
AG3
B
686 712Right-handed alpha
Helix 58
AG4
B
714 720Right-handed alpha
Helix 59
AG5
B
744 757Right-handed alpha
Helix 60
AG6
B
757 767Right-handed alpha
Helix 61
AG7
B
783 793Right-handed alpha
Helix 62
AG8
B
798 812Right-handed alpha
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There are 2 sheets in PDB entry 8U54. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
780 782first strand
Strand 2
A
830 833anti-parallel
Strand 3
A
815 817anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
780 782first strand
Strand 2
B
830 833anti-parallel
Strand 3
B
815 817anti-parallel
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