Analysis of interatomic Contacts of Structural Units in PDB entry:
8U5E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U5E entry

There are 4 chains in PDB entry 8U5E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 201	PHE 319
B	SER 193	PHE 319
C	SER 193	PHE 319
D	GLY 192	PHE 319

There are 10 helices in PDB entry 8U5E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	211	217	Right-handed alpha
Helix 2	AA2	A	267	270	Right-handed 310
Helix 3	AA3	B	194	199	Right-handed alpha
Helix 4	AA4	B	211	217	Right-handed alpha
Helix 5	AA5	B	267	270	Right-handed 310
Helix 6	AA6	C	211	217	Right-handed alpha
Helix 7	AA7	C	267	270	Right-handed 310
Helix 8	AA8	D	199	203	Right-handed 310
Helix 9	AA9	D	211	216	Right-handed alpha
Helix 10	AB1	D	267	270	Right-handed 310

There are 10 sheets in PDB entry 8U5E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	210	first strand
Strand 2	A	238	244	parallel
Strand 3	A	294	302	anti-parallel
Strand 4	A	259	265	anti-parallel
Strand 5	A	272	277	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	227	first strand
Strand 2	A	313	318	anti-parallel
Strand 3	A	249	255	anti-parallel
Strand 4	A	285	291	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	210	first strand
Strand 2	B	238	244	parallel
Strand 3	B	294	302	anti-parallel
Strand 4	B	259	265	anti-parallel
Strand 5	B	272	277	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	313	318	anti-parallel
Strand 3	B	249	255	anti-parallel
Strand 4	B	285	291	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	309	310	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	205	210	first strand
Strand 2	C	238	244	parallel
Strand 3	C	294	302	anti-parallel
Strand 4	C	259	265	anti-parallel
Strand 5	C	272	277	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	223	227	first strand
Strand 2	C	313	318	anti-parallel
Strand 3	C	249	255	anti-parallel
Strand 4	C	285	291	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	205	210	first strand
Strand 2	D	238	244	parallel
Strand 3	D	294	302	anti-parallel
Strand 4	D	259	265	anti-parallel
Strand 5	D	272	277	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	223	227	first strand
Strand 2	D	313	318	anti-parallel
Strand 3	D	249	255	anti-parallel
Strand 4	D	285	291	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	232	233	first strand
Strand 2	D	309	310	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U5E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U5E