Analysis of interatomic Contacts of Structural Units in PDB entry:
8U5L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U5L entry

There are 5 chains in PDB entry 8U5L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 33	LYS 297
B	VAL 33	LYS 297
C	GLY 31	LYS 297
D	VAL 33	LYS 297
E	VAL 33	TYR 286

There are 53 helices in PDB entry 8U5L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	75	79	Right-handed 310
Helix 2	AA2	A	82	86	Right-handed 310
Helix 3	AA3	A	122	128	Right-handed 310
Helix 4	AA4	A	184	189	Right-handed 310
Helix 5	AA5	A	205	207	Right-handed 310
Helix 6	AA6	B	75	79	Right-handed 310
Helix 7	AA7	B	82	86	Right-handed 310
Helix 8	AA8	B	122	128	Right-handed 310
Helix 9	AA9	B	184	189	Right-handed 310
Helix 10	AB1	B	205	207	Right-handed 310
Helix 11	AB2	B	255	257	Right-handed 310
Helix 12	AB3	C	41	43	Right-handed 310
Helix 13	AB4	C	75	79	Right-handed 310
Helix 14	AB5	C	82	86	Right-handed 310
Helix 15	AB6	C	122	128	Right-handed 310
Helix 16	AB7	C	184	189	Right-handed 310
Helix 17	AB8	C	205	207	Right-handed 310
Helix 18	AB9	C	255	257	Right-handed 310
Helix 19	AC1	D	41	43	Right-handed 310
Helix 20	AC2	D	75	79	Right-handed 310
Helix 21	AC3	D	82	86	Right-handed 310
Helix 22	AC4	D	122	128	Right-handed 310
Helix 23	AC5	D	184	189	Right-handed 310
Helix 24	AC6	D	255	257	Right-handed 310
Helix 25	AC7	E	75	79	Right-handed 310
Helix 26	AC8	E	82	86	Right-handed 310
Helix 27	AC9	E	122	128	Right-handed 310
Helix 28	AD1	E	184	189	Right-handed 310
Helix 29	AD2	E	205	207	Right-handed 310
Helix 30	AD3	E	255	257	Right-handed 310
Helix 31	AD4	F	28	32	Right-handed 310
Helix 32	AD5	F	62	65	Right-handed 310
Helix 33	AD6	F	87	91	Right-handed 310
Helix 34	AD7	F	166	170	Right-handed 310
Helix 35	AD8	F	218	222	Right-handed 310
Helix 36	AD9	H	28	32	Right-handed 310
Helix 37	AE1	H	62	65	Right-handed 310
Helix 38	AE2	H	87	91	Right-handed 310
Helix 39	AE3	H	166	170	Right-handed 310
Helix 40	AE4	H	218	222	Right-handed 310
Helix 41	AE5	J	28	32	Right-handed 310
Helix 42	AE6	J	62	65	Right-handed 310
Helix 43	AE7	J	87	91	Right-handed 310
Helix 44	AE8	J	166	170	Right-handed 310
Helix 45	AE9	J	218	222	Right-handed 310
Helix 46	AF1	K	28	32	Right-handed 310
Helix 47	AF2	K	87	91	Right-handed 310
Helix 48	AF3	K	166	170	Right-handed 310
Helix 49	AF4	K	218	222	Right-handed 310
Helix 50	AF5	N	28	32	Right-handed 310
Helix 51	AF6	N	87	91	Right-handed 310
Helix 52	AF7	N	166	170	Right-handed 310
Helix 53	AF8	N	218	222	Right-handed 310

There are 45 sheets in PDB entry 8U5L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	284	297	anti-parallel
Strand 3	A	108	121	anti-parallel
Strand 4	A	243	244	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	52	first strand
Strand 2	A	284	297	anti-parallel
Strand 3	A	108	121	anti-parallel
Strand 4	A	254	255	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	259	272	anti-parallel
Strand 3	A	278	282	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	259	272	anti-parallel
Strand 3	A	149	156	anti-parallel
Strand 4	A	219	226	anti-parallel
Strand 5	E	234	238	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	197	first strand
Strand 2	A	161	164	anti-parallel
Strand 3	A	209	211	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	238	first strand
Strand 2	B	219	226	anti-parallel
Strand 3	B	149	156	anti-parallel
Strand 4	B	259	272	anti-parallel
Strand 5	B	90	95	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	238	first strand
Strand 2	B	219	226	anti-parallel
Strand 3	B	149	156	anti-parallel
Strand 4	B	259	272	anti-parallel
Strand 5	B	278	282	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	284	297	anti-parallel
Strand 3	B	45	52	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	284	297	anti-parallel
Strand 3	B	108	121	anti-parallel
Strand 4	B	243	244	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	197	first strand
Strand 2	B	161	164	anti-parallel
Strand 3	B	209	211	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	238	first strand
Strand 2	C	219	226	anti-parallel
Strand 3	C	149	156	anti-parallel
Strand 4	C	259	272	anti-parallel
Strand 5	C	90	95	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	238	first strand
Strand 2	C	219	226	anti-parallel
Strand 3	C	149	156	anti-parallel
Strand 4	C	259	272	anti-parallel
Strand 5	C	278	282	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	284	296	anti-parallel
Strand 3	C	45	52	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	284	296	anti-parallel
Strand 3	C	108	121	anti-parallel
Strand 4	C	243	244	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	197	first strand
Strand 2	C	161	164	anti-parallel
Strand 3	C	209	211	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	238	first strand
Strand 2	D	219	226	anti-parallel
Strand 3	D	149	156	anti-parallel
Strand 4	D	259	272	anti-parallel
Strand 5	D	90	95	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	234	238	first strand
Strand 2	D	219	226	anti-parallel
Strand 3	D	149	156	anti-parallel
Strand 4	D	259	272	anti-parallel
Strand 5	D	278	282	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	285	296	anti-parallel
Strand 3	D	45	52	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	285	296	anti-parallel
Strand 3	D	108	120	anti-parallel
Strand 4	D	243	244	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	197	first strand
Strand 2	D	161	164	anti-parallel
Strand 3	D	209	211	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	238	first strand
Strand 2	E	219	226	anti-parallel
Strand 3	E	149	156	anti-parallel
Strand 4	E	259	272	anti-parallel
Strand 5	E	90	95	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	238	first strand
Strand 2	E	219	226	anti-parallel
Strand 3	E	149	156	anti-parallel
Strand 4	E	259	272	anti-parallel
Strand 5	E	278	282	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	284	296	anti-parallel
Strand 3	E	45	52	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	284	296	anti-parallel
Strand 3	E	109	121	anti-parallel
Strand 4	E	243	244	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	197	first strand
Strand 2	E	161	164	anti-parallel
Strand 3	E	209	211	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	114	118	parallel
Strand 3	F	92	99	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	152	first strand
Strand 2	F	242	246	parallel
Strand 3	F	223	229	anti-parallel
Strand 4	F	172	177	anti-parallel
Strand 5	F	184	187	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	163	first strand
Strand 2	F	209	214	anti-parallel
Strand 3	F	201	206	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	114	118	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	152	first strand
Strand 2	H	242	246	parallel
Strand 3	H	223	229	anti-parallel
Strand 4	H	172	177	anti-parallel
Strand 5	H	184	187	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	163	first strand
Strand 2	H	209	214	anti-parallel
Strand 3	H	201	206	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	11	12	first strand
Strand 2	J	114	118	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	33	39	anti-parallel
Strand 5	J	45	51	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	149	152	first strand
Strand 2	J	242	246	parallel
Strand 3	J	223	229	anti-parallel
Strand 4	J	172	177	anti-parallel
Strand 5	J	184	187	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	158	163	first strand
Strand 2	J	209	214	anti-parallel
Strand 3	J	201	206	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	11	12	first strand
Strand 2	K	114	118	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	45	51	anti-parallel
Strand 6	K	58	60	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	149	152	first strand
Strand 2	K	242	246	parallel
Strand 3	K	223	229	anti-parallel
Strand 4	K	172	177	anti-parallel
Strand 5	K	184	187	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	158	163	first strand
Strand 2	K	209	214	anti-parallel
Strand 3	K	201	206	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	18	25	anti-parallel
Strand 3	N	78	83	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	114	118	parallel
Strand 3	N	92	99	anti-parallel
Strand 4	N	33	39	anti-parallel
Strand 5	N	45	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	149	152	first strand
Strand 2	N	242	246	parallel
Strand 3	N	223	229	anti-parallel
Strand 4	N	172	177	anti-parallel
Strand 5	N	184	187	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	158	163	first strand
Strand 2	N	209	214	anti-parallel
Strand 3	N	201	206	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U5L

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U5L