Analysis of interatomic Contacts of Structural Units in PDB entry:
8U5M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U5M entry

There are 6 chains in PDB entry 8U5M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 372GLY 628
B
 LYS 372GLY 628
C
 LYS 372GLY 628
D
 LYS 372GLY 628
E
 LYS 372GLY 628
F
 LYS 372GLY 628
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 8U5M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
383 388Right-handed alpha
Helix 2
AA2
A
392 396Right-handed 310
Helix 3
AA3
A
420 425Right-handed 310
Helix 4
AA4
A
431 448Right-handed alpha
Helix 5
AA5
A
460 475Right-handed alpha
Helix 6
AA6
A
486 489Right-handed 310
Helix 7
AA7
A
491 495Right-handed 310
Helix 8
AA8
A
505 511Right-handed alpha
Helix 9
AA9
A
525 529Right-handed 310
Helix 10
AB1
A
534 553Right-handed alpha
Helix 11
AB2
A
565 572Right-handed alpha
Helix 12
AB3
A
583 592Right-handed alpha
Helix 13
AB4
B
383 388Right-handed alpha
Helix 14
AB5
B
391 396Right-handed 310
Helix 15
AB6
B
420 427Right-handed 310
Helix 16
AB7
B
431 448Right-handed alpha
Helix 17
AB8
B
460 475Right-handed alpha
Helix 18
AB9
B
486 489Right-handed 310
Helix 19
AC1
B
491 495Right-handed 310
Helix 20
AC2
B
505 511Right-handed alpha
Helix 21
AC3
B
525 529Right-handed 310
Helix 22
AC4
B
534 553Right-handed alpha
Helix 23
AC5
B
565 572Right-handed alpha
Helix 24
AC6
B
573 578Right-handed 310
Helix 25
AC7
B
583 592Right-handed alpha
Helix 26
AC8
C
383 388Right-handed alpha
Helix 27
AC9
C
392 396Right-handed 310
Helix 28
AD1
C
420 427Right-handed 310
Helix 29
AD2
C
431 448Right-handed alpha
Helix 30
AD3
C
460 475Right-handed alpha
Helix 31
AD4
C
486 489Right-handed 310
Helix 32
AD5
C
491 495Right-handed 310
Helix 33
AD6
C
505 511Right-handed alpha
Helix 34
AD7
C
525 529Right-handed 310
Helix 35
AD8
C
534 555Right-handed alpha
Helix 36
AD9
C
565 572Right-handed alpha
Helix 37
AE1
C
574 578Right-handed 310
Helix 38
AE2
C
583 592Right-handed alpha
Helix 39
AE3
D
383 388Right-handed alpha
Helix 40
AE4
D
391 396Right-handed 310
Helix 41
AE5
D
420 427Right-handed 310
Helix 42
AE6
D
431 448Right-handed alpha
Helix 43
AE7
D
460 475Right-handed alpha
Helix 44
AE8
D
486 489Right-handed 310
Helix 45
AE9
D
505 511Right-handed alpha
Helix 46
AF1
D
525 529Right-handed 310
Helix 47
AF2
D
534 552Right-handed alpha
Helix 48
AF3
D
565 574Right-handed alpha
Helix 49
AF4
D
575 578Right-handed 310
Helix 50
AF5
D
583 592Right-handed alpha
Helix 51
AF6
E
383 388Right-handed alpha
Helix 52
AF7
E
392 396Right-handed 310
Helix 53
AF8
E
421 427Right-handed 310
Helix 54
AF9
E
431 448Right-handed alpha
Helix 55
AG1
E
460 475Right-handed alpha
Helix 56
AG2
E
486 489Right-handed 310
Helix 57
AG3
E
491 495Right-handed 310
Helix 58
AG4
E
505 511Right-handed alpha
Helix 59
AG5
E
534 552Right-handed alpha
Helix 60
AG6
E
566 572Right-handed alpha
Helix 61
AG7
E
583 592Right-handed alpha
Helix 62
AG8
F
383 388Right-handed alpha
Helix 63
AG9
F
392 397Right-handed alpha
Helix 64
AH1
F
420 427Right-handed 310
Helix 65
AH2
F
431 448Right-handed alpha
Helix 66
AH3
F
460 475Right-handed alpha
Helix 67
AH4
F
486 489Right-handed 310
Helix 68
AH5
F
491 495Right-handed 310
Helix 69
AH6
F
505 511Right-handed alpha
Helix 70
AH7
F
525 529Right-handed 310
Helix 71
AH8
F
534 554Right-handed alpha
Helix 72
AH9
F
567 572Right-handed alpha
Helix 73
AI1
F
583 592Right-handed alpha
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There are 6 sheets in PDB entry 8U5M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 484first strand
Strand 2
A
454 457parallel
Strand 3
A
560 564parallel
Strand 4
A
374 379parallel
Strand 5
A
599 604anti-parallel
Strand 6
A
611 614anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
483 484first strand
Strand 2
B
454 457parallel
Strand 3
B
560 564parallel
Strand 4
B
374 379parallel
Strand 5
B
599 604anti-parallel
Strand 6
B
611 614anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
483 484first strand
Strand 2
C
454 457parallel
Strand 3
C
559 564parallel
Strand 4
C
374 379parallel
Strand 5
C
599 604anti-parallel
Strand 6
C
611 614anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
483 484first strand
Strand 2
D
454 457parallel
Strand 3
D
560 564parallel
Strand 4
D
374 379parallel
Strand 5
D
599 604anti-parallel
Strand 6
D
611 614anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
483 484first strand
Strand 2
E
454 457parallel
Strand 3
E
560 564parallel
Strand 4
E
374 379parallel
Strand 5
E
599 604anti-parallel
Strand 6
E
611 614anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
483 484first strand
Strand 2
F
454 457parallel
Strand 3
F
560 564parallel
Strand 4
F
374 379parallel
Strand 5
F
599 604anti-parallel
Strand 6
F
611 614anti-parallel
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