Analysis of interatomic Contacts of Structural Units in PDB entry:
8U62


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U62 entry

There are 2 chains in PDB entry 8U62 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 SER 2VAL 527
A
 GLN 3ALA 517
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 8U62. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
2 15Right-handed alpha
Helix 2
AA2
B
49 51Right-handed 310
Helix 3
AA3
B
57 62Right-handed alpha
Helix 4
AA4
B
66 71Right-handed alpha
Helix 5
AA5
B
71 83Right-handed alpha
Helix 6
AA6
B
130 145Right-handed alpha
Helix 7
AA7
B
148 165Right-handed alpha
Helix 8
AA8
B
200 204Right-handed 310
Helix 9
AA9
B
205 215Right-handed alpha
Helix 10
AB1
B
253 264Right-handed alpha
Helix 11
AB2
B
294 342Right-handed alpha
Helix 12
AB3
B
346 352Right-handed alpha
Helix 13
AB4
B
352 361Right-handed alpha
Helix 14
AB5
B
381 396Right-handed alpha
Helix 15
AB6
B
441 446Right-handed alpha
Helix 16
AB7
B
468 480Right-handed alpha
Helix 17
AB8
B
488 513Right-handed alpha
Helix 18
AB9
B
513 526Right-handed alpha
Helix 19
AC1
A
4 15Right-handed alpha
Helix 20
AC2
A
48 52Right-handed 310
Helix 21
AC3
A
57 62Right-handed alpha
Helix 22
AC4
A
65 69Right-handed 310
Helix 23
AC5
A
71 82Right-handed alpha
Helix 24
AC6
A
130 146Right-handed alpha
Helix 25
AC7
A
148 165Right-handed alpha
Helix 26
AC8
A
200 204Right-handed 310
Helix 27
AC9
A
205 214Right-handed alpha
Helix 28
AD1
A
253 264Right-handed alpha
Helix 29
AD2
A
294 340Right-handed alpha
Helix 30
AD3
A
346 352Right-handed 310
Helix 31
AD4
A
353 361Right-handed alpha
Helix 32
AD5
A
381 396Right-handed alpha
Helix 33
AD6
A
404 409Right-handed alpha
Helix 34
AD7
A
441 446Right-handed 310
Helix 35
AD8
A
468 480Right-handed alpha
Helix 36
AD9
A
488 517Right-handed alpha
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There are 7 sheets in PDB entry 8U62. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
26 27first strand
Strand 2
B
228 231anti-parallel
Strand 3
B
43 47anti-parallel
Strand 4
B
31 36anti-parallel
Strand 5
B
113 119anti-parallel
Strand 6
B
100 108anti-parallel
Strand 7
B
93 97anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
198 199first strand
Strand 2
B
180 185anti-parallel
Strand 3
B
168 174anti-parallel
Strand 4
B
278 287anti-parallel
Strand 5
B
267 275anti-parallel
Strand 6
B
217 220anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 377first strand
Strand 2
B
364 369anti-parallel
Strand 3
B
435 439anti-parallel
Strand 4
B
421 425anti-parallel
Strand 5
B
399 402anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
228 229anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
32 36anti-parallel
Strand 3
A
114 119anti-parallel
Strand 4
A
100 107anti-parallel
Strand 5
A
94 97anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 199first strand
Strand 2
A
180 187anti-parallel
Strand 3
A
168 174anti-parallel
Strand 4
A
278 287anti-parallel
Strand 5
A
267 275anti-parallel
Strand 6
A
217 220anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 377first strand
Strand 2
A
364 368anti-parallel
Strand 3
A
434 439anti-parallel
Strand 4
A
421 426anti-parallel
Strand 5
A
399 402anti-parallel
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