Analysis of interatomic Contacts of Structural Units in PDB entry:
8U63

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U63 entry

There are 2 chains in PDB entry 8U63 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	SER 512
B	SER 2	SER 512

There are 34 helices in PDB entry 8U63. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	15	Right-handed alpha
Helix 2	AA2	A	49	51	Right-handed 310
Helix 3	AA3	A	66	71	Right-handed alpha
Helix 4	AA4	A	71	82	Right-handed alpha
Helix 5	AA5	A	131	145	Right-handed alpha
Helix 6	AA6	A	148	165	Right-handed alpha
Helix 7	AA7	A	205	215	Right-handed alpha
Helix 8	AA8	A	253	263	Right-handed alpha
Helix 9	AA9	A	294	338	Right-handed alpha
Helix 10	AB1	A	344	351	Right-handed 310
Helix 11	AB2	A	352	361	Right-handed alpha
Helix 12	AB3	A	381	393	Right-handed alpha
Helix 13	AB4	A	404	409	Right-handed alpha
Helix 14	AB5	A	410	416	Right-handed 310
Helix 15	AB6	A	441	446	Right-handed 310
Helix 16	AB7	A	468	480	Right-handed alpha
Helix 17	AB8	A	488	509	Right-handed alpha
Helix 18	AB9	B	3	15	Right-handed alpha
Helix 19	AC1	B	49	51	Right-handed 310
Helix 20	AC2	B	66	71	Right-handed alpha
Helix 21	AC3	B	71	82	Right-handed alpha
Helix 22	AC4	B	131	145	Right-handed alpha
Helix 23	AC5	B	148	165	Right-handed alpha
Helix 24	AC6	B	205	215	Right-handed alpha
Helix 25	AC7	B	253	263	Right-handed alpha
Helix 26	AC8	B	294	338	Right-handed alpha
Helix 27	AC9	B	344	351	Right-handed 310
Helix 28	AD1	B	352	361	Right-handed alpha
Helix 29	AD2	B	381	393	Right-handed alpha
Helix 30	AD3	B	404	409	Right-handed alpha
Helix 31	AD4	B	410	416	Right-handed 310
Helix 32	AD5	B	441	446	Right-handed 310
Helix 33	AD6	B	468	480	Right-handed alpha
Helix 34	AD7	B	488	509	Right-handed alpha

There are 8 sheets in PDB entry 8U63. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	228	231	anti-parallel
Strand 3	A	43	47	anti-parallel
Strand 4	A	31	36	anti-parallel
Strand 5	A	113	120	anti-parallel
Strand 6	A	100	108	anti-parallel
Strand 7	A	93	97	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	199	first strand
Strand 2	A	180	187	anti-parallel
Strand 3	A	168	174	anti-parallel
Strand 4	A	278	287	anti-parallel
Strand 5	A	267	275	anti-parallel
Strand 6	A	217	220	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	234	235	first strand
Strand 2	A	240	241	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	372	377	first strand
Strand 2	A	364	369	anti-parallel
Strand 3	A	433	439	anti-parallel
Strand 4	A	421	423	anti-parallel
Strand 5	A	401	402	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	228	231	anti-parallel
Strand 3	B	43	47	anti-parallel
Strand 4	B	31	36	anti-parallel
Strand 5	B	113	120	anti-parallel
Strand 6	B	100	108	anti-parallel
Strand 7	B	93	97	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	199	first strand
Strand 2	B	180	187	anti-parallel
Strand 3	B	168	174	anti-parallel
Strand 4	B	278	287	anti-parallel
Strand 5	B	267	275	anti-parallel
Strand 6	B	217	220	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	234	235	first strand
Strand 2	B	240	241	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	377	first strand
Strand 2	B	364	369	anti-parallel
Strand 3	B	433	439	anti-parallel
Strand 4	B	421	423	anti-parallel
Strand 5	B	401	402	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U63

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U63