Analysis of interatomic Contacts of Structural Units in PDB entry:
8U6Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U6Z entry

There are 2 chains in PDB entry 8U6Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 76GLU 1193
B
 LYS 76GLU 1193
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 79 helices in PDB entry 8U6Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
77 95Right-handed alpha
Helix 2
AA2
A
102 120Right-handed alpha
Helix 3
AA3
A
120 132Right-handed alpha
Helix 4
AA4
A
134 154Right-handed alpha
Helix 5
AA5
A
156 161Right-handed alpha
Helix 6
AA6
A
162 189Right-handed alpha
Helix 7
AA7
A
194 205Right-handed alpha
Helix 8
AA8
A
210 221Right-handed alpha
Helix 9
AA9
A
223 254Right-handed alpha
Helix 10
AB1
A
260 291Right-handed alpha
Helix 11
AB2
A
297 319Right-handed alpha
Helix 12
AB3
A
321 337Right-handed alpha
Helix 13
AB4
A
342 377Right-handed alpha
Helix 14
AB5
A
381 413Right-handed alpha
Helix 15
AB6
A
418 428Right-handed alpha
Helix 16
AB7
A
432 447Right-handed alpha
Helix 17
AB8
A
449 481Right-handed alpha
Helix 18
AB9
A
487 513Right-handed alpha
Helix 19
AC1
A
522 530Right-handed alpha
Helix 20
AC2
A
571 601Right-handed alpha
Helix 21
AC3
A
604 621Right-handed alpha
Helix 22
AC4
A
627 636Right-handed alpha
Helix 23
AC5
A
637 639Right-handed 310
Helix 24
AC6
A
640 653Right-handed alpha
Helix 25
AC7
A
677 699Right-handed alpha
Helix 26
AC8
A
731 756Right-handed alpha
Helix 27
AC9
A
761 777Right-handed alpha
Helix 28
AD1
A
798 806Right-handed alpha
Helix 29
AD2
A
807 816Right-handed 310
Helix 30
AD3
A
817 854Right-handed alpha
Helix 31
AD4
A
860 889Right-handed alpha
Helix 32
AD5
A
889 919Right-handed alpha
Helix 33
AD6
A
923 943Right-handed alpha
Helix 34
AD7
A
952 959Right-handed alpha
Helix 35
AD8
A
966 977Right-handed alpha
Helix 36
AD9
A
1044 1049Right-handed alpha
Helix 37
AE1
A
1070 1080Right-handed alpha
Helix 38
AE2
A
1085 1107Right-handed alpha
Helix 39
AE3
A
1113 1123Right-handed alpha
Helix 40
AE4
B
77 95Right-handed alpha
Helix 41
AE5
B
101 120Right-handed alpha
Helix 42
AE6
B
120 132Right-handed alpha
Helix 43
AE7
B
134 154Right-handed alpha
Helix 44
AE8
B
156 161Right-handed alpha
Helix 45
AE9
B
162 189Right-handed alpha
Helix 46
AF1
B
194 205Right-handed alpha
Helix 47
AF2
B
210 221Right-handed alpha
Helix 48
AF3
B
223 254Right-handed alpha
Helix 49
AF4
B
260 291Right-handed alpha
Helix 50
AF5
B
297 319Right-handed alpha
Helix 51
AF6
B
321 337Right-handed alpha
Helix 52
AF7
B
342 375Right-handed alpha
Helix 53
AF8
B
376 380Right-handed 310
Helix 54
AF9
B
381 413Right-handed alpha
Helix 55
AG1
B
418 428Right-handed alpha
Helix 56
AG2
B
432 447Right-handed alpha
Helix 57
AG3
B
450 481Right-handed alpha
Helix 58
AG4
B
487 513Right-handed alpha
Helix 59
AG5
B
522 530Right-handed alpha
Helix 60
AG6
B
571 601Right-handed alpha
Helix 61
AG7
B
604 621Right-handed alpha
Helix 62
AG8
B
627 636Right-handed alpha
Helix 63
AG9
B
637 639Right-handed 310
Helix 64
AH1
B
640 653Right-handed alpha
Helix 65
AH2
B
677 699Right-handed alpha
Helix 66
AH3
B
731 756Right-handed alpha
Helix 67
AH4
B
761 777Right-handed alpha
Helix 68
AH5
B
798 806Right-handed alpha
Helix 69
AH6
B
807 816Right-handed 310
Helix 70
AH7
B
817 854Right-handed alpha
Helix 71
AH8
B
860 889Right-handed alpha
Helix 72
AH9
B
889 919Right-handed alpha
Helix 73
AI1
B
923 943Right-handed alpha
Helix 74
AI2
B
952 959Right-handed alpha
Helix 75
AI3
B
966 977Right-handed alpha
Helix 76
AI4
B
1044 1049Right-handed alpha
Helix 77
AI5
B
1070 1080Right-handed alpha
Helix 78
AI6
B
1085 1107Right-handed alpha
Helix 79
AI7
B
1113 1123Right-handed alpha
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There are 9 sheets in PDB entry 8U6Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
978 982first strand
Strand 2
A
1063 1069anti-parallel
Strand 3
A
997 1003anti-parallel
Strand 4
A
1041 1042anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1033 1037first strand
Strand 2
A
1005 1009anti-parallel
Strand 3
A
1056 1059anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1125 1126first strand
Strand 2
A
1185 1189anti-parallel
Strand 3
A
1144 1149anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1135 1137first strand
Strand 2
A
1173 1175anti-parallel
Strand 3
A
1151 1154anti-parallel
Strand 4
A
1160 1162anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
978 982first strand
Strand 2
B
1063 1069anti-parallel
Strand 3
B
997 1003anti-parallel
Strand 4
B
1041 1042anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1033 1036first strand
Strand 2
B
1006 1009anti-parallel
Strand 3
B
1056 1059anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1135 1137first strand
Strand 2
B
1173 1175anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1144 1149first strand
Strand 2
B
1185 1189anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1151 1153first strand
Strand 2
B
1160 1162anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il