Analysis of interatomic Contacts of Structural Units in PDB entry:
8U72

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U72 entry

There are 6 chains in PDB entry 8U72 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
U	U 1	A 19
V	T 3	C 20
H	MET 1	SER 420
I	MET 1	ILE 507
E	MET 1	ILE 507
M	U 1	U 1

There are100 helices in PDB entry 8U72. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	15	29	Right-handed alpha
Helix 2	AA2	H	44	56	Right-handed alpha
Helix 3	AA3	H	71	89	Right-handed alpha
Helix 4	AA4	H	123	138	Right-handed alpha
Helix 5	AA5	H	150	159	Right-handed alpha
Helix 6	AA6	H	160	162	Right-handed 310
Helix 7	AA7	H	233	237	Right-handed 310
Helix 8	AA8	H	242	247	Right-handed alpha
Helix 9	AA9	H	257	277	Right-handed alpha
Helix 10	AB1	H	300	304	Right-handed 310
Helix 11	AB2	H	357	365	Right-handed alpha
Helix 12	AB3	H	366	368	Right-handed 310
Helix 13	AB4	H	369	385	Right-handed alpha
Helix 14	AB5	I	15	17	Right-handed 310
Helix 15	AB6	I	22	30	Right-handed alpha
Helix 16	AB7	I	46	60	Right-handed alpha
Helix 17	AB8	I	77	83	Right-handed alpha
Helix 18	AB9	I	97	106	Right-handed alpha
Helix 19	AC1	I	109	131	Right-handed alpha
Helix 20	AC2	I	144	149	Right-handed alpha
Helix 21	AC3	I	204	218	Right-handed alpha
Helix 22	AC4	I	226	230	Right-handed alpha
Helix 23	AC5	I	248	264	Right-handed alpha
Helix 24	AC6	I	331	351	Right-handed alpha
Helix 25	AC7	I	366	377	Right-handed alpha
Helix 26	AC8	I	451	464	Right-handed alpha
Helix 27	AC9	I	477	491	Right-handed alpha
Helix 28	AD1	E	15	17	Right-handed 310
Helix 29	AD2	E	22	30	Right-handed alpha
Helix 30	AD3	E	46	60	Right-handed alpha
Helix 31	AD4	E	77	83	Right-handed alpha
Helix 32	AD5	E	97	106	Right-handed alpha
Helix 33	AD6	E	110	131	Right-handed alpha
Helix 34	AD7	E	206	216	Right-handed alpha
Helix 35	AD8	E	226	230	Right-handed alpha
Helix 36	AD9	E	248	264	Right-handed alpha
Helix 37	AE1	E	289	291	Right-handed 310
Helix 38	AE2	E	331	351	Right-handed alpha
Helix 39	AE3	E	366	377	Right-handed alpha
Helix 40	AE4	E	451	464	Right-handed alpha
Helix 41	AE5	E	477	492	Right-handed alpha
Helix 42	AE6	E	502	507	Right-handed alpha
Helix 43	AE7	D	15	29	Right-handed alpha
Helix 44	AE8	D	47	56	Right-handed alpha
Helix 45	AE9	D	71	89	Right-handed alpha
Helix 46	AF1	D	123	139	Right-handed alpha
Helix 47	AF2	D	148	158	Right-handed alpha
Helix 48	AF3	D	233	237	Right-handed 310
Helix 49	AF4	D	257	277	Right-handed alpha
Helix 50	AF5	D	278	280	Right-handed 310
Helix 51	AF6	D	300	304	Right-handed 310
Helix 52	AF7	D	355	365	Right-handed alpha
Helix 53	AF8	D	369	385	Right-handed alpha
Helix 54	AF9	B	15	28	Right-handed alpha
Helix 55	AG1	B	48	56	Right-handed alpha
Helix 56	AG2	B	72	89	Right-handed alpha
Helix 57	AG3	B	123	139	Right-handed alpha
Helix 58	AG4	B	147	159	Right-handed alpha
Helix 59	AG5	B	241	246	Right-handed alpha
Helix 60	AG6	B	257	278	Right-handed alpha
Helix 61	AG7	B	300	304	Right-handed 310
Helix 62	AG8	B	355	365	Right-handed alpha
Helix 63	AG9	B	366	368	Right-handed 310
Helix 64	AH1	B	371	384	Right-handed alpha
Helix 65	AH2	C	15	17	Right-handed 310
Helix 66	AH3	C	22	30	Right-handed alpha
Helix 67	AH4	C	46	61	Right-handed alpha
Helix 68	AH5	C	77	83	Right-handed alpha
Helix 69	AH6	C	97	105	Right-handed alpha
Helix 70	AH7	C	112	131	Right-handed alpha
Helix 71	AH8	C	204	218	Right-handed alpha
Helix 72	AH9	C	226	230	Right-handed alpha
Helix 73	AI1	C	248	264	Right-handed alpha
Helix 74	AI2	C	334	351	Right-handed alpha
Helix 75	AI3	C	366	377	Right-handed alpha
Helix 76	AI4	C	451	464	Right-handed alpha
Helix 77	AI5	C	477	491	Right-handed alpha
Helix 78	AI6	F	10	28	Right-handed alpha
Helix 79	AI7	F	47	56	Right-handed alpha
Helix 80	AI8	F	71	89	Right-handed alpha
Helix 81	AI9	F	123	138	Right-handed alpha
Helix 82	AJ1	F	150	162	Right-handed alpha
Helix 83	AJ2	F	243	245	Right-handed 310
Helix 84	AJ3	F	257	277	Right-handed alpha
Helix 85	AJ4	F	300	304	Right-handed 310
Helix 86	AJ5	F	353	365	Right-handed alpha
Helix 87	AJ6	F	369	384	Right-handed alpha
Helix 88	AJ7	G	15	17	Right-handed 310
Helix 89	AJ8	G	22	30	Right-handed alpha
Helix 90	AJ9	G	46	61	Right-handed alpha
Helix 91	AK1	G	77	83	Right-handed alpha
Helix 92	AK2	G	97	105	Right-handed alpha
Helix 93	AK3	G	112	131	Right-handed alpha
Helix 94	AK4	G	204	216	Right-handed alpha
Helix 95	AK5	G	226	230	Right-handed alpha
Helix 96	AK6	G	248	264	Right-handed alpha
Helix 97	AK7	G	331	351	Right-handed alpha
Helix 98	AK8	G	366	377	Right-handed alpha
Helix 99	AK9	G	451	465	Right-handed alpha
Helix 100	AL1	G	477	493	Right-handed alpha

There are 39 sheets in PDB entry 8U72. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	32	33	first strand
Strand 2	H	4	8	parallel
Strand 3	H	57	64	parallel
Strand 4	H	94	98	parallel
Strand 5	H	118	119	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	295	299	first strand
Strand 2	I	278	288	anti-parallel
Strand 3	I	302	305	anti-parallel
Strand 4	I	311	314	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	295	299	first strand
Strand 2	I	278	288	anti-parallel
Strand 3	I	356	361	parallel
Strand 4	I	382	389	parallel
Strand 5	I	441	445	anti-parallel
Strand 6	I	417	420	anti-parallel
Strand 7	I	409	414	anti-parallel
Strand 8	I	2	6	anti-parallel
Strand 9	H	409	412	parallel
Strand 10	H	169	172	anti-parallel
Strand 11	I	397	398	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	326	328	first strand
Strand 2	H	334	336	anti-parallel
Strand 3	H	175	180	anti-parallel
Strand 4	H	400	404	anti-parallel
Strand 5	H	390	394	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	184	187	first strand
Strand 2	H	238	241	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	283	286	first strand
Strand 2	H	291	294	anti-parallel
Strand 3	H	317	323	anti-parallel
Strand 4	H	311	314	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	283	286	first strand
Strand 2	H	291	294	anti-parallel
Strand 3	H	317	323	anti-parallel
Strand 4	H	339	344	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	20	first strand
Strand 2	I	12	13	anti-parallel
Strand 3	I	270	271	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	91	95	first strand
Strand 2	I	41	45	parallel
Strand 3	I	138	143	parallel
Strand 4	I	221	225	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	425	426	first strand
Strand 2	I	431	432	anti-parallel

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	320	first strand
Strand 2	E	296	305	anti-parallel
Strand 3	E	279	287	anti-parallel
Strand 4	E	356	361	parallel
Strand 5	E	382	389	parallel
Strand 6	E	441	447	anti-parallel
Strand 7	E	417	420	anti-parallel
Strand 8	E	409	414	anti-parallel
Strand 9	E	2	6	anti-parallel
Strand 10	D	410	412	parallel
Strand 11	D	169	171	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	19	20	first strand
Strand 2	E	12	13	anti-parallel
Strand 3	E	270	271	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	95	first strand
Strand 2	E	41	45	parallel
Strand 3	E	138	143	parallel
Strand 4	E	221	225	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	425	426	first strand
Strand 2	E	431	432	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	32	33	first strand
Strand 2	D	4	8	parallel
Strand 3	D	57	64	parallel
Strand 4	D	94	98	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	328	first strand
Strand 2	D	334	336	anti-parallel
Strand 3	D	175	180	anti-parallel
Strand 4	D	401	404	anti-parallel
Strand 5	D	390	393	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	187	first strand
Strand 2	D	238	241	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	286	first strand
Strand 2	D	291	294	anti-parallel
Strand 3	D	317	324	anti-parallel
Strand 4	D	311	314	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	286	first strand
Strand 2	D	291	294	anti-parallel
Strand 3	D	317	324	anti-parallel
Strand 4	D	338	344	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	4	8	parallel
Strand 3	B	57	64	parallel
Strand 4	B	94	98	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	409	412	first strand
Strand 2	B	169	172	anti-parallel
Strand 3	C	397	398	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	328	first strand
Strand 2	B	334	336	anti-parallel
Strand 3	B	175	180	anti-parallel
Strand 4	B	400	404	anti-parallel
Strand 5	B	390	394	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	285	286	first strand
Strand 2	B	291	294	anti-parallel
Strand 3	B	320	323	anti-parallel
Strand 4	B	339	342	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	409	414	anti-parallel
Strand 3	C	417	420	anti-parallel
Strand 4	C	441	444	anti-parallel
Strand 5	C	382	389	anti-parallel
Strand 6	C	356	361	parallel
Strand 7	C	278	288	parallel
Strand 8	C	302	305	anti-parallel
Strand 9	C	311	314	anti-parallel

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There are 9 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	409	414	anti-parallel
Strand 3	C	417	420	anti-parallel
Strand 4	C	441	444	anti-parallel
Strand 5	C	382	389	anti-parallel
Strand 6	C	356	361	parallel
Strand 7	C	278	288	parallel
Strand 8	C	295	299	anti-parallel
Strand 9	C	320	322	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	12	13	anti-parallel
Strand 3	C	270	271	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	95	first strand
Strand 2	C	41	45	parallel
Strand 3	C	138	143	parallel
Strand 4	C	221	225	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	236	first strand
Strand 2	C	240	241	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	426	first strand
Strand 2	C	431	432	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	32	34	first strand
Strand 2	F	5	8	parallel
Strand 3	F	60	64	parallel
Strand 4	F	94	98	parallel
Strand 5	F	118	119	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	409	412	first strand
Strand 2	F	169	172	anti-parallel
Strand 3	G	397	398	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	293	294	first strand
Strand 2	F	321	328	anti-parallel
Strand 3	F	334	341	anti-parallel
Strand 4	F	175	180	anti-parallel
Strand 5	F	400	403	anti-parallel
Strand 6	F	391	394	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	217	218	first strand
Strand 2	F	184	187	anti-parallel
Strand 3	F	240	241	anti-parallel

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There are 9 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	G	409	411	anti-parallel
Strand 3	G	417	420	anti-parallel
Strand 4	G	441	447	anti-parallel
Strand 5	G	382	389	anti-parallel
Strand 6	G	356	361	parallel
Strand 7	G	278	288	parallel
Strand 8	G	295	305	anti-parallel
Strand 9	G	311	314	anti-parallel

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There are 9 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	6	first strand
Strand 2	G	409	411	anti-parallel
Strand 3	G	417	420	anti-parallel
Strand 4	G	441	447	anti-parallel
Strand 5	G	382	389	anti-parallel
Strand 6	G	356	361	parallel
Strand 7	G	278	288	parallel
Strand 8	G	295	305	anti-parallel
Strand 9	G	320	322	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	19	20	first strand
Strand 2	G	12	13	anti-parallel
Strand 3	G	270	271	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	95	first strand
Strand 2	G	41	45	parallel
Strand 3	G	138	143	parallel
Strand 4	G	221	225	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	235	236	first strand
Strand 2	G	240	241	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	425	426	first strand
Strand 2	G	431	432	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U72

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U72