Analysis of interatomic Contacts of Structural Units in PDB entry:
8U77


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U77 entry

There are 8 chains in PDB entry 8U77 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 176THR 243
B
 GLU 1392LYS 1403
C
 SER 172ASN 242
D
 GLU 1392LYS 1403
E
 VAL 177THR 243
F
 GLU 1392LEU 1401
G
 SER 176THR 243
H
 GLU 1392LEU 1401
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 8U77. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
178 187Right-handed alpha
Helix 2
AA2
A
190 205Right-handed alpha
Helix 3
AA3
A
206 210Right-handed 310
Helix 4
AA4
A
225 227Right-handed 310
Helix 5
AA5
A
228 242Right-handed alpha
Helix 6
AA6
C
179 187Right-handed alpha
Helix 7
AA7
C
190 205Right-handed alpha
Helix 8
AA8
C
223 227Right-handed 310
Helix 9
AA9
C
228 242Right-handed alpha
Helix 10
AB1
E
178 187Right-handed alpha
Helix 11
AB2
E
190 205Right-handed alpha
Helix 12
AB3
E
206 210Right-handed 310
Helix 13
AB4
E
223 227Right-handed 310
Helix 14
AB5
E
228 242Right-handed alpha
Helix 15
AB6
G
178 187Right-handed alpha
Helix 16
AB7
G
190 205Right-handed alpha
Helix 17
AB8
G
206 210Right-handed 310
Helix 18
AB9
G
223 227Right-handed 310
Helix 19
AC1
G
228 243Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 8U77. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 214first strand
Strand 2
A
219 223anti-parallel
Strand 3
B
1393 1400anti-parallel
Strand 4
D
1393 1400anti-parallel
Strand 5
C
219 222anti-parallel
Strand 6
C
212 214anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 174first strand
Strand 2
C
177 178anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
212 214first strand
Strand 2
E
219 222anti-parallel
Strand 3
F
1393 1400anti-parallel
Strand 4
H
1393 1400anti-parallel
Strand 5
G
219 222anti-parallel
Strand 6
G
212 214anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il