Analysis of interatomic Contacts of Structural Units in PDB entry:
8U79


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8U79 entry

There is 1 chain in PDB entry 8U79 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 18LYS 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8U79. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 46Right-handed alpha
Helix 2
AA2
A
59 69Right-handed alpha
Helix 3
AA3
A
79 88Right-handed alpha
Helix 4
AA4
A
125 130Right-handed 310
Helix 5
AA5
A
141 154Right-handed alpha
Helix 6
AA6
A
157 161Right-handed 310
Helix 7
AA7
A
168 178Right-handed alpha
Helix 8
AA8
A
192 202Right-handed alpha
Helix 9
AA9
A
210 216Right-handed alpha
Helix 10
AB1
A
257 270Right-handed alpha
Helix 11
AB2
A
271 277Right-handed alpha
Helix 12
AB3
A
279 286Right-handed alpha
Helix 13
AB4
A
287 292Right-handed alpha
Helix 14
AB5
A
300 310Right-handed alpha
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There are 2 sheets in PDB entry 8U79. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
19 24parallel
Strand 3
A
74 78parallel
Strand 4
A
241 253anti-parallel
Strand 5
A
102 118anti-parallel
Strand 6
A
204 206anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 165first strand
Strand 2
A
133 135parallel
Strand 3
A
183 188parallel
Strand 4
A
102 118anti-parallel
Strand 5
A
241 253anti-parallel
Strand 6
A
225 229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il