Analysis of interatomic Contacts of Structural Units in PDB entry:
8U7B

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8U7B entry

There are 2 chains in PDB entry 8U7B (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ARG 2	ASP 432
C	MET 1	ILE 507

There are 39 helices in PDB entry 8U7B. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	14	29	Right-handed alpha
Helix 2	AA2	B	34	38	Right-handed 310
Helix 3	AA3	B	46	56	Right-handed alpha
Helix 4	AA4	B	71	88	Right-handed alpha
Helix 5	AA5	B	104	108	Right-handed 310
Helix 6	AA6	B	109	114	Right-handed alpha
Helix 7	AA7	B	123	138	Right-handed alpha
Helix 8	AA8	B	146	157	Right-handed alpha
Helix 9	AA9	B	190	194	Right-handed 310
Helix 10	AB1	B	227	233	Right-handed 310
Helix 11	AB2	B	234	238	Right-handed 310
Helix 12	AB3	B	243	248	Right-handed alpha
Helix 13	AB4	B	257	279	Right-handed alpha
Helix 14	AB5	B	300	304	Right-handed 310
Helix 15	AB6	B	355	366	Right-handed alpha
Helix 16	AB7	B	369	384	Right-handed alpha
Helix 17	AB8	B	423	430	Right-handed alpha
Helix 18	AB9	C	15	17	Right-handed 310
Helix 19	AC1	C	22	30	Right-handed alpha
Helix 20	AC2	C	46	60	Right-handed alpha
Helix 21	AC3	C	78	83	Right-handed alpha
Helix 22	AC4	C	97	106	Right-handed alpha
Helix 23	AC5	C	109	131	Right-handed alpha
Helix 24	AC6	C	144	151	Right-handed alpha
Helix 25	AC7	C	158	162	Right-handed 310
Helix 26	AC8	C	169	174	Right-handed alpha
Helix 27	AC9	C	183	198	Right-handed alpha
Helix 28	AD1	C	199	202	Right-handed 310
Helix 29	AD2	C	205	214	Right-handed alpha
Helix 30	AD3	C	215	218	Right-handed 310
Helix 31	AD4	C	226	230	Right-handed alpha
Helix 32	AD5	C	231	234	Right-handed 310
Helix 33	AD6	C	248	264	Right-handed alpha
Helix 34	AD7	C	331	351	Right-handed alpha
Helix 35	AD8	C	366	377	Right-handed alpha
Helix 36	AD9	C	451	463	Right-handed alpha
Helix 37	AE1	C	477	482	Right-handed alpha
Helix 38	AE2	C	482	494	Right-handed alpha
Helix 39	AE3	C	504	506	Right-handed 310

There are 11 sheets in PDB entry 8U7B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	32	33	first strand
Strand 2	B	4	8	parallel
Strand 3	B	57	64	parallel
Strand 4	B	94	98	parallel
Strand 5	B	118	119	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	B	409	412	parallel
Strand 3	B	169	173	anti-parallel
Strand 4	C	396	398	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	334	344	anti-parallel
Strand 3	B	317	328	anti-parallel
Strand 4	B	311	314	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	214	216	anti-parallel
Strand 3	B	184	188	anti-parallel
Strand 4	B	239	242	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	286	first strand
Strand 2	B	291	294	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	390	394	first strand
Strand 2	B	400	404	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	409	412	anti-parallel
Strand 3	C	417	420	anti-parallel
Strand 4	C	441	447	anti-parallel
Strand 5	C	382	388	anti-parallel
Strand 6	C	356	361	parallel
Strand 7	C	278	287	parallel
Strand 8	C	297	304	anti-parallel
Strand 9	C	311	318	anti-parallel
Strand 10	C	501	502	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	19	20	first strand
Strand 2	C	12	13	anti-parallel
Strand 3	C	270	271	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	95	first strand
Strand 2	C	41	45	parallel
Strand 3	C	138	143	parallel
Strand 4	C	221	225	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	322	first strand
Strand 2	C	327	328	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	425	426	first strand
Strand 2	C	431	432	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8U7B

Analysis of interatomic Contacts of Structural Units in PDB entry:
8U7B